Pairwise Alignments

Query, 1149 a.a., helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1067 a.a., RNA polymerase-associated protein RapA from Acinetobacter radioresistens SK82

 Score =  292 bits (747), Expect = 1e-82
 Identities = 194/523 (37%), Positives = 287/523 (54%), Gaps = 52/523 (9%)

Query: 463  HQDIGVRWILGVEQKSLSDSKVSGALLADDMGLGKTFMALSAIEHIYQRQQISGETKKPA 522
            HQ+ G+ W+  + Q   +  +VSG LLADDMGLGKT   L  I    +    + + KKP 
Sbjct: 581  HQEYGIAWLQNLHQ--YAPEQVSGCLLADDMGLGKTLQLLCFIGEYLE----NAKDKKPV 634

Query: 523  LIVAPLSLLENWKDEVDKTFKHSPFKDVVILQSSAELNEYRMGGVEIRGQSASDDCLEPK 582
            L+VAP+SLLENW+ E ++ F  + F  ++ L     L + ++    I  Q   D  +   
Sbjct: 635  LVVAPVSLLENWEAEANRFFS-AKFAKILSLYGE-NLKDRKIPKHLISAQLRDDHGIT-- 690

Query: 583  YSLKVGKYFGPSRLDLPERLVITTYQTLRDYQFSMCLIDWGIVVFDEAQNIKNPNALQTR 642
              L    + G + +      V+TTY+T+RD +FS+  +DWGI++ DEAQ IK P A+ T+
Sbjct: 691  -HLLEEDWRGDADI------VLTTYETMRDLEFSLARVDWGIMICDEAQKIKVPTAMVTK 743

Query: 643  AAKGLKADFKLVATGTPVENSLADFWCLMDTACPGHLGSYQEFRARYISPILKAAGDEVE 702
            AAK  KADFK+  TGTPVENSL D WCL D      LGS  EF   Y  PI     +  E
Sbjct: 744  AAKAQKADFKIACTGTPVENSLTDLWCLFDFIQENLLGSLNEFGKTYRRPI-----ENSE 798

Query: 703  EIRARLGRELRIAVGALMLRRIKEDNLKGLPLKHMYAGGEFENWKYLEELKSTMVGYQRD 762
                ++  +LR  +   +LRR+K D +  LP K      E ++ K +     T+   QR 
Sbjct: 799  NTDNKVLEQLRQLIAPQVLRRMKHD-VADLPEKI-----EVDHCKNI-----TISSLQRH 847

Query: 763  VYEGAISHQL----ENEESHALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESG 818
            +Y   I+       E  +   L +L  +R    HP         +  NA    ++Y ES 
Sbjct: 848  LYADVINRYRRLSEEGNQGAMLASLHSMRMICAHP-------FQLQPNA----SIY-ESP 895

Query: 819  KLVSLLETLDRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKS 878
            K+  L++TL+ +++K EK IIF   + +Q FL   L + + L  ++ +NGD+   +K+  
Sbjct: 896  KVDWLIKTLEVIKTKNEKVIIFTEFRDIQVFLKRILLERFGLN-VTTVNGDSNTSSKKGL 954

Query: 879  VPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAKEAQATDRVYR 938
              TR+++I  F+A  GFN+I++S  A G G+ +  ANHV+H  R WNPAKE QATDR YR
Sbjct: 955  --TRQNLIDKFQATSGFNVIILSTTAVGFGVNIQKANHVIHYTRSWNPAKEDQATDRAYR 1012

Query: 939  IGQEKEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVVTP 981
            IGQ+KEV +Y P +   +F++F++ L RLL+ K  L D ++ P
Sbjct: 1013 IGQDKEVFVYYPSIAANDFDTFEIKLDRLLSSKRALADDMLQP 1055