Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., integrase arm-type DNA-binding domain-containing protein from Rhodanobacter sp000427505 FW510-R12

 Score =  213 bits (543), Expect = 6e-60
 Identities = 129/417 (30%), Positives = 212/417 (50%), Gaps = 31/417 (7%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           L+   ++ AKP DK  RL DGG LY  V PS  + W+ +Y+  G++K   LS GTYPD  
Sbjct: 3   LSDATVRKAKPSDKPQRLFDGGGLYLEVAPSGGKWWRLKYRFGGKEK--RLSLGTYPDTG 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LA+ARE+   ARK LA G+DP + ++ +KA  +     +F+ VA +W A K+ +      
Sbjct: 61  LADARERRDAARKLLAQGVDPGVQRKAEKAAGVDRAANSFEVVAREWLAVKKPEWTAGQF 120

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIES----QGLLETVKRTAQLMNEIMN 180
                +LE +AFP++G++PV    A + +  +RP+ +    QG +E   R    ++ +  
Sbjct: 121 AKECGRLENHAFPRIGALPV----ADIGVGEIRPLFAYLIKQGHIEQAHRLRHQLSRVFR 176

Query: 181 YAVNSGVIHANPLAGIRDVF-KKHKVVHMKALQPHEMHDLIRTV----ATANIQHVTRFL 235
           +AV +     +P A +RD    ++   H     P  + +L+R +     T  +Q   +  
Sbjct: 177 FAVATERASRDPAADLRDTLPSRNPQNHPTITDPERVGELMRAIDGFTGTLPVQCALKLA 236

Query: 236 IEWQLHTMVRPNEASGARWEEIDMVNK--LWIIPKERMKMNRE---------HVVPLTAQ 284
             W      RP E   A W   D+  +   + +P    K+ +          H+VPL+ Q
Sbjct: 237 PLW----FCRPGEIRMAEWTHFDLDGEHPSYTVPPMNRKLKKAAKENPSTPPHIVPLSRQ 292

Query: 285 TLAILEAIKPISGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTL 344
            L IL  ++ ++GH  ++FP +R+PK        N AL R+G+K   T HG R +A T L
Sbjct: 293 ALEILRELRQLTGHGRYLFPGARDPKRHMSDGAVNAALARIGYKGIITGHGFRHMARTLL 352

Query: 345 NEQGFEPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVA 401
            E G+ P+ +E  L+H +   +   YN+  +L  RRK+M  W+++++    GS + A
Sbjct: 353 GELGWNPEALERQLSHKEPG-VAGVYNKAQHLPERRKVMQAWADYLDSLRAGSTASA 408