Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., Prophage integrase IntS from Xanthobacter sp. DMC5

 Score =  209 bits (532), Expect = 1e-58
 Identities = 132/400 (33%), Positives = 211/400 (52%), Gaps = 17/400 (4%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT   I+ AKPK+K Y+LSD   L+  V P   + W+  Y+  G+ +   L+FG+Y  ++
Sbjct: 2   LTDTAIKAAKPKEKPYKLSDAEGLHLLVTPQGGKLWRLAYRFGGKQR--QLTFGSYKYVT 59

Query: 65  LAEAREKALEARKQLADGIDP----QLAKEEQKAKTITEQNATFKFVAEQW--KATKEGQ 118
           LAEARE+  EA++ LA G+DP    +  K EQ+A     QN TF  VA ++  K  KEG+
Sbjct: 60  LAEARERRTEAKRLLASGVDPGANIKSRKAEQRAAEEAAQN-TFGVVASEFIEKIRKEGR 118

Query: 119 IKEKTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEI 178
                 +  W  L   A P L   P+S++TA   +  LR +E++G  E  +R    +  +
Sbjct: 119 APATMEKAEWL-LRTIAAP-LADRPISEITAREVLDVLRHVEAKGNHEAARRARSTIGRV 176

Query: 179 MNYAVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHE-MHDLIRTVATANI-QHVTRFLI 236
           + YA+ +     +  + ++       V H  A+   + +  L+  +   N  Q  T   +
Sbjct: 177 LRYAIATDRAERDVTSDLKGALIAPPVQHRAAITEEKALGKLMAAIYGWNRGQPTTVAAL 236

Query: 237 EWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPIS 296
           +      +RP E   ARW EID+   +WIIP  R KM R+H  PL  Q + +L+A++P++
Sbjct: 237 KLLAMLALRPGEVRAARWSEIDLEKAVWIIPAGRTKMRRQHRTPLPRQAVEVLKALRPVT 296

Query: 297 --GHREFIFPSSRNPKVPTDSETANKALGRMGF-KDRTTAHGLRALASTTLNE-QGFEPD 352
             G    +F ++ +   P    T N A+ R+GF     T+HG RA  +T  NE + + PD
Sbjct: 297 DRGPDSLVFHATTSVLKPISENTLNVAIRRLGFTASEMTSHGFRAAFATLANESRKWHPD 356

Query: 353 VIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEK 392
            IE  LAH + N +R+AY R ++ + R  LM WW++H+++
Sbjct: 357 AIERQLAHVEGNNVRRAYTRGEHWEERITLMQWWADHLDR 396