Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

 Score =  145 bits (366), Expect = 2e-39
 Identities = 125/412 (30%), Positives = 187/412 (45%), Gaps = 33/412 (8%)

Query: 3   NNLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYK------RPGQDKITYLS 56
           N L ARQ+QT K      R +DGG LY  V  S +R W F ++       PG  K+  + 
Sbjct: 6   NRLNARQVQTIKEPG---RHADGGGLYLVVDKSGARRWVFLFRWKATPTEPGTGKLREMG 62

Query: 57  FGTYPDMSLAEAREKALEARKQLADGIDP----QLAKEEQKAKTITE-QNATFKFVAEQW 111
            G+   +SLA ARE A+  R+Q+A G+DP    ++AK      T  E   A  + +   W
Sbjct: 63  LGSAISVSLAAAREAAVRVREQIAAGVDPIAASRIAKAAASVPTFGEVAEAHIRAMEPAW 122

Query: 112 KATKEGQIKEKTLE----GNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLET 167
           + TK       TL      +   LE      +    V ++T    +  L PI S+   ET
Sbjct: 123 RNTKHVAQWRSTLSLERGEDGAFLEAGYCASIRDTAVDQITTEDVLKILSPIWSEKN-ET 181

Query: 168 VKRTAQLMNEIMNYAVNSGVIHA-NP------LAGIRDVFKKHKVVHMKALQPHEMHDLI 220
             R    +  +++ A   G+    NP      LA      +K +  H +A+   ++  L+
Sbjct: 182 ASRVRGRIEAVLDAAKAKGLRSGENPARWKGHLALTLPKRQKLQRGHHEAMAYGDVPALV 241

Query: 221 RTVATANIQHVTRFLIEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVP 280
           + +    ++ ++ F +E+ + T  R  E  GARW E+D+  K+W +P  RMK  REH VP
Sbjct: 242 KRLRL--VRGMSAFALEFAILTAARSGEVRGARWGEMDLKAKVWTVPAARMKAGREHRVP 299

Query: 281 LTAQTLAILEAIKPISGH-REFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLR-A 338
           L  + + ILE +  I     + +FP  R    P    +    L R+  K   T HG R +
Sbjct: 300 LCDRAVEILETLAQIKQEPDDLVFPGQRK-GAPLSDMSLTALLRRL--KVDATVHGFRSS 356

Query: 339 LASTTLNEQGFEPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHI 390
                 +   F  +V EAALAH   +    AY R+D L+ RRKLM  W   I
Sbjct: 357 FRDWAGDATTFPREVAEAALAHAVGDATEAAYRRSDALEKRRKLMESWGAFI 408