Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

 Score =  132 bits (332), Expect = 2e-35
 Identities = 121/402 (30%), Positives = 178/402 (44%), Gaps = 31/402 (7%)

Query: 3   NNLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPD 62
           N LTAR + + K      R  DGGNLY  + P+ S++W F +KR G+ +   +  G+  D
Sbjct: 6   NRLTARTVASLKDPG---RYPDGGNLYLQIGPTGSKAWLFMFKRDGKRR--EMGLGSLND 60

Query: 63  MSLAEAREKALEARKQLADGIDPQLAKEEQKA-KTITEQNATFKFVAEQWKATKEGQIKE 121
           ++LA AR KA EAR+ +ADG DP   +E   A +   E   TF   A+          + 
Sbjct: 61  VTLAAARMKADEARRIVADGGDPFAVREAALAVRKEAEAAPTFGAFADALITKLAHGFRN 120

Query: 122 KTLEGNWRK-LELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMN 180
           +     W+  L       +  + ++ +TA   +  L PI  Q   ET  R    +  +++
Sbjct: 121 EKHVAQWQMTLGPTYCSAIRDMKIADITAVDILKVLEPIW-QDKNETASRLRGRIERVLD 179

Query: 181 YAVNSGV-IHANPL---AGIRDVFKKHKVV---HMKALQPHEMHDLIRTVATANIQHVTR 233
            A   G+    NP      ++    K + +   H  AL   E+   I  VA      +  
Sbjct: 180 AAKVEGLRTGENPAQWKGNLQHRLSKRQKLQRGHHAALPYAEVPAFI--VALRARPAMAA 237

Query: 234 FLIEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIK 293
             +E+ + T  R  E   A W EID    +W +P  RMK  REH VPL+   +A+L   +
Sbjct: 238 RALEFAILTAARSGEVLSATWAEIDFKAAVWTVPATRMKAGREHRVPLSDAAIAVLREAE 297

Query: 294 PISGHRE-------FIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLR-ALASTTLN 345
           P   HR        F+FP  R P  P  +      L R   K   T HG R +       
Sbjct: 298 P---HRRGDDPETAFLFPGLR-PMRPLSTMAMEMLLRRQ--KQVFTVHGFRSSFRDWAAE 351

Query: 346 EQGFEPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWS 387
           E  F  ++ EAALAH   +   +AY R D L+ RR LM+ W+
Sbjct: 352 ETSFPREIAEAALAHVVGDATERAYRRGDALEKRRDLMTAWA 393