Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., integrase from Pseudomonas simiae WCS417

 Score =  407 bits (1047), Expect = e-118
 Identities = 198/401 (49%), Positives = 272/401 (67%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           L+ RQ++  KP  K Y L+DG  L   VR + S  W F Y+ P       +  GTYP++S
Sbjct: 8   LSDRQLKGVKPASKDYVLTDGDGLQLRVRSNGSLLWNFNYREPVTKNRINMGLGTYPELS 67

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LA AR+ A++AR+ LA GIDP++ ++        E   TF+ VA  W   K+  +     
Sbjct: 68  LANARKMAVQARELLAQGIDPKVQRDTLNEAKRAETEHTFENVATAWFDLKKDSVTPAYA 127

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
           E  WR L L+ FP L + P++K+TAPM I  LRPIE++G LETVKR +Q +NEIM Y VN
Sbjct: 128 EDIWRSLTLHVFPDLKTTPLAKITAPMVIELLRPIEAKGSLETVKRLSQRLNEIMTYGVN 187

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           SG+I ANPL+GIR VFKK K  +M AL P E+ +L+  +A A+I+  TR LIEWQLHTM 
Sbjct: 188 SGLIFANPLSGIRAVFKKPKKENMAALPPEELPELMLELANASIKRTTRCLIEWQLHTMT 247

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           RP EA+  RW +ID   ++W IP ERMK  R H +PL+ Q +A+L+ +K  SGHRE++FP
Sbjct: 248 RPAEAATTRWSDIDFEKRIWTIPPERMKKRRPHSIPLSDQAMALLDILKSHSGHREYVFP 307

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
           + RNP+   +S+TAN AL RMGF+DR  +HG+R++AST LNE G++P++IE ALAH DK+
Sbjct: 308 ADRNPRTHANSQTANMALKRMGFQDRLVSHGMRSIASTILNEHGWDPELIEVALAHVDKD 367

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGTGY 405
           ++R AYNR DY++ RR +M+WWSEHI+K++ GS S A   +
Sbjct: 368 EVRSAYNRADYIERRRTMMAWWSEHIQKAATGSLSAAAINH 408