Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., integrase from Pseudomonas simiae WCS417

 Score =  229 bits (585), Expect = 8e-65
 Identities = 131/390 (33%), Positives = 201/390 (51%), Gaps = 13/390 (3%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT    + AKP++  Y + D   L   V PS  +SW FR+   G  K   +S GTYP+  
Sbjct: 3   LTDTAAKQAKPRENGYTIPDSLGLSLYVAPSGVKSWHFRFTWLG--KQVRISIGTYPETG 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           L EAR +  EAR+ +A+G+DP+ ++ E+KA  I     TF+ V ++W A ++G I   T 
Sbjct: 61  LKEARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQTFRRVYDEWLAFRKGSISPGTY 120

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
                 + L   P LG   +  +     IA +R +E +G + T  +  Q M+++ +YA+ 
Sbjct: 121 RVISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVFSYAIA 180

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPH------EMHDLIRTVATANIQHVTRFLIEW 238
           +GVI ANP A +  V +K     M   +PH      EM  ++  +         +  +  
Sbjct: 181 TGVIEANPTAEMHAVTEK-----MGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAALML 235

Query: 239 QLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGH 298
            ++T  RP E   A W EID+   +W  P  +MKM R+H VPL+ Q +AILE++ PI+G 
Sbjct: 236 MIYTASRPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPITGD 295

Query: 299 REFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAAL 358
           + ++F +  +   P  +  AN  +   G     + HG R L ST +N +G+  D IE  L
Sbjct: 296 KRYVFINRNSTTAPIGTNYANNVMDSCGLTGIQSPHGFRHLFSTEMNGRGYNRDWIERQL 355

Query: 359 AHTDKNQIRKAYNRTDYLDSRRKLMSWWSE 388
           AH D + IR  YN   YLD RR +M  W++
Sbjct: 356 AHADSSFIRDVYNHATYLDQRRGMMQEWAD 385