Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., integrase arm-type DNA-binding domain-containing protein from Variovorax sp. OAS795

 Score =  194 bits (492), Expect = 5e-54
 Identities = 128/402 (31%), Positives = 195/402 (48%), Gaps = 13/402 (3%)

Query: 1   MANNLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTY 60
           M   LT +   T  P+ +  R +DGGNLY    P+ S+ W ++Y   G++K   L+ G+Y
Sbjct: 1   MLTELTCKNA-TCPPEKRRARFTDGGNLYLEAAPNGSKRWFWKYTFDGKEK--RLAIGSY 57

Query: 61  PDMSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIK 120
           P + L +AR    EARK L  G DP   +   KA        T++ VA ++ A K     
Sbjct: 58  PTVRLKDARASRDEARKVLQTGADPTQRRRLNKAAVRVNAVTTYEKVAREFHAVKTKGWS 117

Query: 121 EKTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMN 180
           E       R  E   FP +G +P+  +TA + +  LR +ES+GL ET     Q   ++  
Sbjct: 118 EAHSTKWLRLQESNLFPWIGGLPLRDITASVLLDPLRRVESKGLNETAVSLRQYAGQVFR 177

Query: 181 YAVNSGVIHANPLAGIRDVFKKHKVVHMKA-LQPHEMHDLIRTVATANIQHVTRFLIEWQ 239
           Y + +G    +P   +R       V +M A L P +  DL+R + + +    TR  +   
Sbjct: 178 YGIATGRCEDDPATKLRGALGAVIVKNMAAVLAPAKAGDLMRAIDSYHGLPATREALLLS 237

Query: 240 LHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNRE-------HVVPLTAQTLAILEAI 292
                RP    G  W  +D  N    IP   MK  ++       H+VPL  Q +A L+ +
Sbjct: 238 ALLFQRPGNIRGMEWAWVDFKNCQITIPAASMKRTKQAKLSGEPHMVPLAPQAVASLKRM 297

Query: 293 KPISGHREFIFPSSRNPKVPTDSETANKALGRMGFKD-RTTAHGLRALASTTLNEQ-GFE 350
             ++GH  ++FPS    + P    T N AL RMGF +   TAHG RA+A T + E+    
Sbjct: 298 YVLTGHGRYVFPSLLTAERPMSDNTVNTALRRMGFDNTEMTAHGFRAMARTIMVEELHVN 357

Query: 351 PDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEK 392
           P+VIE  LAH     +  AYNR  +   RRK+M+ W++++++
Sbjct: 358 PEVIEEQLAHGKSGPLGAAYNRAQFKAQRRKMMTLWADYLDQ 399