Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  435 bits (1119), Expect = e-126
 Identities = 217/409 (53%), Positives = 281/409 (68%), Gaps = 3/409 (0%)

Query: 1   MANN---LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSF 57
           MA N   LT ++I+ +KP++K Y L DG  L   ++P+ S+ W F Y RP   K   LSF
Sbjct: 1   MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF 60

Query: 58  GTYPDMSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEG 117
           G YPD+SL +AR+  L A++ +A GIDPQ  ++ Q+         TF+ V + W A K+ 
Sbjct: 61  GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN 120

Query: 118 QIKEKTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNE 177
            +        WR LEL+ FP +   PV  +TAP  I  L+PIE++G LETVKR  Q +NE
Sbjct: 121 DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE 180

Query: 178 IMNYAVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIE 237
           +MN+A N G+I ANPL GI+  FKK K  +M AL P E+ +L+  +A A+I+  TR L+E
Sbjct: 181 VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE 240

Query: 238 WQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISG 297
           WQLHTM RP EASGARW+EI+   K+W IP ERMK  REH +PLT Q LA+LE +KPISG
Sbjct: 241 WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG 300

Query: 298 HREFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAA 357
           HR+FIFPS R PK P +S+TAN AL RMGF  R  +HGLR+LASTTLNEQGF+PD++E+A
Sbjct: 301 HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA 360

Query: 358 LAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGTGYL 406
           LAH D NQ+R AYNRTDYL+ R+ +M WWSEHIE+++ GS SV GT  L
Sbjct: 361 LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQL 409