Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  403 bits (1035), Expect = e-117
 Identities = 201/404 (49%), Positives = 272/404 (67%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  Q++ AK  DK Y LSDG  L   V+ + ++ W  +Y  P   K   +SFG +PD+S
Sbjct: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LAEAR++  EA+  LA  IDP+  K+EQ  K   E   TF   +++W   K   +K +T 
Sbjct: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
           +  +R LE +  PKLG++P+  +     ++ L P+++QG LETVKR  +++NE+M  AV 
Sbjct: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           SG I  N LA I  +F   K  HM  ++P  + +L++ +A ANI   TR L+EWQLHTM 
Sbjct: 188 SGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMT 247

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           RP E++ ARW++ID  NK+W+IP ERMKM R H +PLT QTLA+LE +KPIS HRE+IFP
Sbjct: 248 RPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYIFP 307

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
           S++NPK   +S++AN AL RMG+K +  +HGLRALASTTLNEQGF PD+IEAALAH DKN
Sbjct: 308 SNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAHVDKN 367

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGTGYLHL 408
           ++RKAYNR +YL+ RRKLMSWWS HI  +S  + S+A    L L
Sbjct: 368 EVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSLAERKVLKL 411