Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  143 bits (361), Expect = 9e-39
 Identities = 113/340 (33%), Positives = 174/340 (51%), Gaps = 22/340 (6%)

Query: 63  MSLAEAREKALEARKQLADGIDPQLAKEEQK--AKTITEQNATFKFVAEQWKATKEGQIK 120
           +SLAEAR+KA E R ++  G+DP   K  QK  A   T ++ TFK  AE   + K G+ K
Sbjct: 82  LSLAEARDKAREIRAKVRSGVDPIEEKRVQKQAAHIGTAKSKTFKECAELCISDKSGEWK 141

Query: 121 EKTLEGNWRK-LELYAFPKLGSIPVSKLTAPMAIAALRPI-ESQGLLETVKRTAQLMNEI 178
                  W   LE YA+PKLG +PVS +   + +  LRPI  ++G  ET  R    +  +
Sbjct: 142 NGKHVKQWSATLETYAYPKLGKLPVSSVDRGLILDVLRPIWATKG--ETASRLRGRIETV 199

Query: 179 MNYA-VNSGVIHANPLAGI----RDVFKKHKVV--HMKALQPHEMHDLIRTVATANIQHV 231
           +N+A VN      NP A        + K+ K+   H  +L   E+   +  +   +   +
Sbjct: 200 LNWAKVNGYRDGENPAAWKGNLEHSLSKRQKLTRGHHASLPYAELGSFMADLRKRD--GI 257

Query: 232 TRFLIEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEA 291
           +   +E+ + T+ R  E   A W EID+  K+W+IP ERMK  +EH VPL+   +A+L+A
Sbjct: 258 SARALEFAILTVARSGEVRKATWAEIDLDRKMWVIPAERMKAGKEHRVPLSDAVVALLKA 317

Query: 292 IKPISGHREFIFPSSRNPKVPTDSETA-NKALGRMGFKDRTTAHGLRALASTTLNE-QGF 349
           +  ++G  +++FP+ R   +   + TA  K + R G     T HG R+       E   +
Sbjct: 318 LPRVAG-SDYVFPAPRGGAMSDMALTAVLKRMDRAGL----TQHGFRSTFREWAGEVTAY 372

Query: 350 EPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEH 389
             +VIE ALAH+  ++   AY R   L  R KLM+ W+ +
Sbjct: 373 PREVIEHALAHSLADKAEAAYQRGSLLPKRVKLMADWATY 412