Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., symbiosis island integrase from Sphingobium sp. HT1-2

 Score =  161 bits (407), Expect = 4e-44
 Identities = 129/396 (32%), Positives = 190/396 (47%), Gaps = 29/396 (7%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LTA +++ A  K   Y  SDG  L+  V  +   SW  R +  G+ +   +  G+   ++
Sbjct: 4   LTANEVKAALSKPGTY--SDGDGLFLKVSKTGGASWLLRVQHEGERRD--IGLGSAKLVT 59

Query: 65  LAEAREKALEARKQLA-DGIDPQLAKEEQKAKTITEQNAT---FKFVAEQWKATKEGQIK 120
           LA  R KA EAR+ +  DG D    K + KA+++  + A    F+    QW  TK     
Sbjct: 60  LAGVRAKAAEARRAIREDGRDLVAEKRKAKAESVLFREAALTYFETHKSQWSNTKS---- 115

Query: 121 EKTLEGNW-RKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIM 179
               E  W   +E YAFP LGS PV  +TA   I A+  I ++   ET +R  Q +  ++
Sbjct: 116 ----EDQWINSMEAYAFPSLGSKPVGSITAGEIITAISKIWTEKP-ETGRRVKQRIRAVL 170

Query: 180 NYAVNSG----VIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFL 235
           N+A   G       A+ LA    + K+    H  A+   ++   I  + TA     +R  
Sbjct: 171 NFAHARGWRSTEAPADALAAGNGLPKQRSGKHHAAMPYADLPAFITRLRTAGGTW-SRLA 229

Query: 236 IEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPI 295
           +E+ + T  R  E   A W EID+   LW +P + MKM  EHVVPL+   L +L +   I
Sbjct: 230 LEFVILTAARSQEVRLATWSEIDLEKGLWTVPADHMKMRIEHVVPLSPHALTVLHSAMAI 289

Query: 296 SGH-REFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEP-DV 353
                + IFP +    +     T    L RM  K+ TT HG R+   T + E+   P +V
Sbjct: 290 RRQGTDLIFPGANGGAM--SDMTLLAVLRRM--KEPTTVHGFRSSFRTWVAEETNVPGEV 345

Query: 354 IEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEH 389
            EAALAH ++N++ +AY R   LD RRKLM  W  +
Sbjct: 346 AEAALAHQNRNEVERAYQRGGLLDKRRKLMEAWGAY 381