Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., Integrase from Sphingobium sp. HT1-2

 Score =  225 bits (573), Expect = 2e-63
 Identities = 130/398 (32%), Positives = 214/398 (53%), Gaps = 9/398 (2%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  QI   KP++K Y+++D   LY  V P+ S  W+ +++  G +K   ++ G YPD+ 
Sbjct: 2   LTTIQINALKPREKPYKVADAKGLYILVNPNGSLLWRVKFRFHGIEK--KMALGRYPDVG 59

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQW--KATKEGQIKEK 122
           L EAR+K  EAR+QL  G+DP  A+ + K +       TF+ V +++  K  +EG+    
Sbjct: 60  LKEARQKRDEAREQLEGGVDPLAARIQAKIEAEAAARTTFRVVTDEFIEKMEREGKAPAT 119

Query: 123 TLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYA 182
             +  W + EL   P +G  P+++++A   + AL+  E +G  E+  R       +  YA
Sbjct: 120 LKKMRWFRDELQ--PTIGHRPIAEISAHELLNALKRFERKGHFESAIRARSFSGRVFRYA 177

Query: 183 VNSGVIHANPLAGIRDVFKKHKVVHMKAL-QPHEMHDLIRTVATANIQHVTRFLIEWQLH 241
           V +     NP   +R      KV H  AL +P ++ +L+R +     +  TR  ++   H
Sbjct: 178 VATLRAQHNPADILRGALITPKVKHHAALLEPAKVGELLRAIDGYGGKIETRIALQLAPH 237

Query: 242 TMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREF 301
             +RP E   A W EID    +W +P  R KM + H VPL+ Q + +L  ++ +     +
Sbjct: 238 VYLRPGELRKAEWGEIDFDAAVWRVPAGRTKMRKPHAVPLSTQVVTLLRELRAMGNLGSY 297

Query: 302 IFPSSRNPKVPTDSETANKALGRMGF-KDRTTAHGLRALASTTLNEQG-FEPDVIEAALA 359
           +FP++     P    T N AL R+GF +D  T+HG R++AST LNE G + PD IE +LA
Sbjct: 298 LFPANSTFLKPICENTLNVALRRLGFTRDEMTSHGFRSIASTLLNESGLWHPDAIERSLA 357

Query: 360 HTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGS 397
           H +++ +R AY+R  + + R ++  WWS+++ K   G+
Sbjct: 358 HRERDSVRAAYHRGAHWEERVRMAQWWSDYLCKLRDGA 395