Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., Phage integrase from Sphingobium sp. HT1-2

 Score =  258 bits (658), Expect = 3e-73
 Identities = 143/391 (36%), Positives = 220/391 (56%), Gaps = 5/391 (1%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           L+A  +  AKP++K Y+L+DG  LY  V P   R W+  Y+  G+ K   ++ G +P ++
Sbjct: 3   LSALALSKAKPREKPYKLADGHGLYLLVTPQGGRYWRMNYRFDGKAKT--MAMGVFPLIT 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LAEAREK  +ARK LA G DP   ++E +A+   E    F+ VAE+W A +E +      
Sbjct: 61  LAEAREKREDARKLLAAGSDPCAKRKEIEAQEAFEATTGFRIVAEEWLAKREREGLGDIT 120

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
            G  + L  +A+P LG   + ++T+   +A LR +E +G  ET +R   +   +  YA+ 
Sbjct: 121 IGKIKWLLEFAYPSLGDRKIGEITSMELLAVLRQVEGRGRHETARRLRSVCGRVFRYAIA 180

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKAL-QPHEMHDLIRTVATANIQHVTRFLIEWQLHTM 243
           +G    +  A +RD     KV H+ A+    ++  L+R +   +   VT+  +    H  
Sbjct: 181 TGRAEHDLSANLRDALTTPKVKHLAAITSSQQVGPLLRAIDGFDGHAVTKAALRLAPHVF 240

Query: 244 VRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIF 303
           VRP E   A W EID    LW IP E+MKM R H VPL+ Q+L IL +I+ ++G  +F+F
Sbjct: 241 VRPGELRHAEWPEIDFEKALWSIPAEKMKMRRPHRVPLSRQSLTILSSIREVTGAGKFVF 300

Query: 304 PSSRNPKVPTDSETANKALGRMGFK-DRTTAHGLRALASTTLNEQG-FEPDVIEAALAHT 361
           P  ++ K P      N AL R+G+  D  T+HG RA+AST LNE G + PD IE  LAH 
Sbjct: 301 PGFQSLKRPMSENALNGALRRLGYSGDEMTSHGFRAMASTLLNEMGKWHPDAIERQLAHA 360

Query: 362 DKNQIRKAYNRTDYLDSRRKLMSWWSEHIEK 392
           + + +R+AY R +Y + R  +M  WS+++++
Sbjct: 361 EADAVRRAYARGEYWEERVVMMQAWSDYLDE 391