Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 424 a.a., Prophage integrase IntA from Pseudomonas sp. DMC3

 Score =  411 bits (1057), Expect = e-119
 Identities = 201/400 (50%), Positives = 273/400 (68%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           L+ RQ++  KP  K Y L+DG  L   VR + S  W F Y+ P   K   + FGTYP++S
Sbjct: 8   LSDRQLKGVKPASKDYVLTDGDGLQLRVRSNGSLLWNFNYREPVTKKRINIGFGTYPELS 67

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LA AR+KA+EAR+ LA GIDP++ +         E   TF+ VA  W   K+  +     
Sbjct: 68  LANARKKAVEARELLAQGIDPKVQRSTLNEAKRAETEHTFENVATAWFELKKDSVTPAYA 127

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
           E  WR L L+ FP L + P++K+TAPM IA LRPIE++G LETVKR +Q +NEIM Y VN
Sbjct: 128 EDIWRSLTLHVFPDLKTTPLTKITAPMVIALLRPIEAKGSLETVKRLSQRLNEIMTYGVN 187

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           SG+I ANPL GIR VFKK K  +M AL P E+ +L+  +A A+I+  TR LIEWQLHTM 
Sbjct: 188 SGLIFANPLTGIRAVFKKPKKENMAALPPEELPELMLEIANASIKRTTRCLIEWQLHTMT 247

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           RP EA+  RW +ID   ++W IP ERMK  R H +PL+   +A+LE++K  SGHRE++FP
Sbjct: 248 RPAEAATTRWTDIDFERRVWTIPPERMKKRRPHSIPLSDHAVALLESLKTHSGHREYVFP 307

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
           + RNP+   +S+TAN AL RMGF+DR  +HG+R++AST LNE G++P++IE ALAH DK+
Sbjct: 308 ADRNPRTHANSQTANMALKRMGFQDRLVSHGMRSMASTILNEHGWDPELIEVALAHVDKD 367

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGTG 404
           ++R AYNR DY++ RR +M+WWSE+I+K++ GS   +  G
Sbjct: 368 EVRSAYNRADYIERRRPMMAWWSEYIQKAATGSLLASAYG 407