Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., Prophage integrase IntA from Pseudomonas sp. DMC3

 Score =  198 bits (504), Expect = 2e-55
 Identities = 125/387 (32%), Positives = 189/387 (48%), Gaps = 8/387 (2%)

Query: 14  KPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMSLAEAREKAL 73
           +P+ K YR  DG  LYF V+P   +SWQ RYKRP  +   ++  G YP++S A AREKA 
Sbjct: 20  EPETKEYRELDGNGLYFRVKPDGGKSWQLRYKRPAGNW-AWMGLGGYPEVSGALAREKAA 78

Query: 74  EARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQW-KATKEGQIKEKTLEGNWRKLE 132
           E RK ++ G DP   K   KA     +  TF+  AE W KA +E  +   TL      L+
Sbjct: 79  ELRKVVSSGADPLEQKRSAKAAIDAARIRTFRAAAEAWLKAKEEKGLASSTLNKIRTYLD 138

Query: 133 LYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVNSGVIHANP 192
               P LG  P+ ++T          +E++      ++    +N+I   A+  G+   +P
Sbjct: 139 KDILPALGDKPLDEITRTDCANLQASLEARDAHNVAEKCRTWVNQIFGRAIGLGLTENDP 198

Query: 193 LAGIRDVFKKHKVV--HMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMVRPNEAS 250
            + +RD+  +      H   L+P E+ + +  +     +   R      + T  RP    
Sbjct: 199 GSRLRDIAAQAPKTQQHPHLLEP-ELGEFLTALKNTPSRLTARTAAWLCIWTASRPGMVR 257

Query: 251 GARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFPSSRNPK 310
            A W+E D+   LW  P  +MKM R+   PL  Q L  L  +  ++G   ++FP     K
Sbjct: 258 LAEWKEFDLDKALWTTPASKMKMRRDFACPLPRQALLALRELHALTGRSRWLFPGV-GAK 316

Query: 311 VPTDSE-TANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKNQIRKA 369
            PT SE T NK    +G+K R   HG R  AST L E G+  + +EA LAH ++  I   
Sbjct: 317 NPTISENTINKVFATIGYKGRLVGHGTRHTASTLLREHGWPKEHVEAQLAHKEEG-ISGV 375

Query: 370 YNRTDYLDSRRKLMSWWSEHIEKSSYG 396
           YN+  YL+ R  +M W+++H++K   G
Sbjct: 376 YNKAQYLEQRTTMMQWYADHLDKLQDG 402



 Score = 24.6 bits (52), Expect = 0.006
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 84  DPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTLEGNWRKLELYAFPKLGSIP 143
           D  L+  E + K   E +    +   +    K  Q++ K   GNW  + L  +P+     
Sbjct: 13  DTTLSGLEPETKEYRELDGNGLYFRVKPDGGKSWQLRYKRPAGNWAWMGLGGYPE----- 67

Query: 144 VSKLTAPMAIAALRPIESQG 163
           VS   A    A LR + S G
Sbjct: 68  VSGALAREKAAELRKVVSSG 87