Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Integrase from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  140 bits (353), Expect = 7e-38
 Identities = 102/374 (27%), Positives = 172/374 (45%), Gaps = 16/374 (4%)

Query: 28  LYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTY--PDMSLAEAREKALEARKQLADGIDP 85
           +Y  V P+ + +++F Y+  G+ +   L+ G Y    +SLA AREK L+A+K +A G  P
Sbjct: 1   MYVTVSPTGTVTFRFDYRLNGRRET--LTIGRYGPAGISLAMAREKLLDAKKAVAQGKSP 58

Query: 86  QLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTLEGNWRKLELYAFPKLGSIPVS 145
              K+ +K +    +N  F  +  QW A+   ++ + T       ++    P   +  ++
Sbjct: 59  AHEKQREKRRLTAAKN--FGDMTAQWLAS--ARMADSTRAMRKSIVDRDILPAFQNRLLN 114

Query: 146 KLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVNSGVIHANPLAGIRDVFKKHKV 205
           ++TA    A    ++ +G   T      ++ ++  +A+  G    NP A +        V
Sbjct: 115 EITADDLRALCGKVKGRGAPATAVHVRDIVKQVYAFAILHGEKVDNPAADVGAASIATFV 174

Query: 206 VHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMVRPNEASGARWEEIDMVNKLWI 265
              +AL P E+  + R + +       R  +   L T+VR +E   A W+E+D     W 
Sbjct: 175 PKDRALSPLEIRLMSRQMESVATYPTIRLALRMILLTLVRKSELIEATWDEVDFETATWT 234

Query: 266 IPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFPSSRNPKVPTDSETANKALGRM 325
           IPK+RMK    HVV L+ Q L IL A+   +   +F+ PS  +        T N+    +
Sbjct: 235 IPKQRMKGRNPHVVYLSRQALDILVALHTCAAGSKFVLPSRYDSDRCMSHATLNRVTQIV 294

Query: 326 GFKDRT--------TAHGLRALASTTLNEQGFEPDVIEAALAHTDKNQIRKAYNRTDYLD 377
             + +         T H LR   ST LNE GF  D IE  LAH +    R  YN+ +Y +
Sbjct: 295 AQRAKAAGLPLEPFTVHDLRRTGSTLLNEIGFNRDWIEKCLAHEEGRSSRSIYNKAEYAE 354

Query: 378 SRRKLMSWWSEHIE 391
            RR ++  W+  ++
Sbjct: 355 QRRHMLQEWASMVD 368