Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 388 a.a., tyrosine-type recombinase/integrase from Pectobacterium carotovorum WPP14

 Score =  258 bits (660), Expect = 2e-73
 Identities = 132/387 (34%), Positives = 213/387 (55%), Gaps = 4/387 (1%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  Q +TAK K+KLYRL+D   LY  V+P+  ++W++R+K  G  K +  + G YP + 
Sbjct: 2   LTDTQCRTAKLKEKLYRLNDFNGLYLEVKPNGKKAWRYRFKLNG--KSSMFALGEYPTVK 59

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LAEAREK  +ARKQ+ADG+ P  A++  K + + + + TF+ +A++W   K+     KT 
Sbjct: 60  LAEAREKCEQARKQVADGVSPTQARQLDKIRKVNDASNTFELIAKEWLQMKDWADITKTR 119

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
             +   LE   FP +G +P+ ++T    +  L+    +G         + ++ +   AV 
Sbjct: 120 RLDM--LERIVFPAIGKLPIREITPHHILKILQETAKRGAPTVAAEARRTISSVFELAVA 177

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +    ++P+  +R     +K  H +AL P ++  L+     +   +   + +     T+ 
Sbjct: 178 TLRADSDPVWPVRKALPANKTQHKQALNPQQIGKLLSCFDNSRGSYQVNYCMWLMWWTLA 237

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           RP E + A W E D+ N LW IP  RMK  REHV+PL +Q +++L  ++ ++GHR+ IFP
Sbjct: 238 RPAEVTEAEWAEFDLDNGLWTIPATRMKARREHVIPLPSQAVSMLRTLQGLTGHRQHIFP 297

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
              NP+ P  S +  + L  +G+    + H  R   ST LNE G+ PD IEA LAH D N
Sbjct: 298 GRDNPRGPMTSHSLRQLLKSLGWSGTYSPHATRTTGSTRLNEMGYRPDAIEAQLAHADTN 357

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIE 391
            +R+ YN   YLD R+ +M  W++ +E
Sbjct: 358 NVRRTYNHATYLDERKVMMQEWADKLE 384