Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., integrase arm-type DNA-binding domain-containing protein from Pectobacterium carotovorum WPP14

 Score =  234 bits (598), Expect = 3e-66
 Identities = 136/403 (33%), Positives = 219/403 (54%), Gaps = 20/403 (4%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  ++++AKP++K Y+L+DG  ++  V  + S+ W+ RY+  G++K   L+ G YP++S
Sbjct: 3   LTDIKVRSAKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYRSDGKEKT--LALGVYPEVS 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           L+EAR+K  EARK +A G+DP   K+  K +   ++  TF+ VA  W  T   +  E   
Sbjct: 61  LSEARQKRDEARKLIAAGVDPNEHKKAVKTQQQDDEQ-TFEAVARAWH-TDNKKWSESHA 118

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
           E   + L    FP +GS  +S L     +A ++ +E  G LE  KR  Q +  IM YAV 
Sbjct: 119 ERILKSLSDNIFPAIGSKHISDLKTRDLLAPIKSVERSGRLEVAKRLKQRVTAIMTYAVQ 178

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +G+I  NP   +       KV H  AL+   + +L+  +     +  T+++I   L   +
Sbjct: 179 NGLIDYNPAQDMAGAIMPGKVEHRPALELERLPELLGRIDGYKGREFTKWVINLSLLIFI 238

Query: 245 RPNEASGARWEEIDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAILEAI 292
           R +E   ARW EID    LW IP ER             KM+  H+VPL+ Q L IL+ I
Sbjct: 239 RSSELRFARWPEIDFERALWTIPPEREPIPGVKFSERGSKMHTPHLVPLSHQALEILKKI 298

Query: 293 KPISGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRT--TAHGLRALASTTLNEQG-F 349
           + +SGH E +F    + + P    T NKAL  MG+  +T    HG R +A ++L E G +
Sbjct: 299 REVSGHCELVFIGDHSSRKPISEGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGLW 358

Query: 350 EPDVIEAALAHTDKNQIRKAY-NRTDYLDSRRKLMSWWSEHIE 391
             D +E  ++H ++N +R AY ++ ++LD R+ ++ WW++ ++
Sbjct: 359 SRDAVERQMSHQERNGVRAAYIHKAEHLDERKLMLQWWADFLD 401