Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., DUF4102 domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  238 bits (606), Expect = 3e-67
 Identities = 140/399 (35%), Positives = 218/399 (54%), Gaps = 9/399 (2%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  QI+ AKP DK  +L+DGG ++  V P + R W+ +Y+  G++K+  L+ G YPD++
Sbjct: 3   LTDLQIKAAKPADKPIKLADGGGMFLLVTPQDQRYWRLKYRFGGKEKL--LALGVYPDVT 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           +  AR+   +A+KQLA+GIDP  A++ +K+  + +   +F+ VA +W A       E   
Sbjct: 61  IKTARQLRDDAKKQLANGIDPSDARKAKKSSQLLDGPDSFENVAREWFAKNVATWAETHS 120

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
               ++LE   FP +G+ P+  +TAPM +A  R IE++G  +T  R  Q   +IM YAV 
Sbjct: 121 SKVLQRLESDVFPLIGTKPIGSITAPMILAVARKIEARGANDTAHRAVQNAGQIMRYAVA 180

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKAL-QPHEMHDLIRTVATANIQHVTRFLIEWQLHTM 243
           +G    +P   +R      +  H  AL  P  + +L+R         V +  ++      
Sbjct: 181 TGRAERDPTGDLRGALPPVRHKHFAALTDPKLVGELLRAFDAFEGTVVVKAALQLAPLVF 240

Query: 244 VRPNEASGARWEEIDMVNKLWII--PKERMKMNREHVVPLTAQTLAILEAIKPISGHREF 301
           VRP E   A+W +ID+    W     K R     EH+VPL+ Q + IL  +   +G+RE 
Sbjct: 241 VRPGELRKAKWADIDLDAGSWAFHASKARKGETIEHLVPLSTQAVEILRDLHQYTGNREC 300

Query: 302 IFPSSRNPKVPTDSETANKALGRMGFKDRT--TAHGLRALASTTLNEQ-GFEPDVIEAAL 358
           +FP  R+P+ P      N AL R+G+  +T  T HG RA+A T L EQ G +P VIE  L
Sbjct: 301 LFP-GRDPRKPMSEAAVNAALRRLGYDTKTEITGHGFRAMARTILAEQLGEDPHVIEQQL 359

Query: 359 AHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGS 397
           AH   + + +AYNRT Y++ RR +M  WS++++    G+
Sbjct: 360 AHRVPDALGRAYNRTKYIEQRRAMMQRWSDYLDTLKAGA 398