Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., tyrosine-type recombinase/integrase from Serratia liquefaciens MT49

 Score =  366 bits (940), Expect = e-106
 Identities = 180/389 (46%), Positives = 253/389 (65%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  ++Q AK  +K   L DG  L+  V+ +  + W+FRY RPG    T +S G YP +S
Sbjct: 8   LTHTEVQKAKAIEKDLTLHDGDGLFLLVKTTGKKLWRFRYLRPGTSSRTMVSLGAYPALS 67

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LA+AR+   E    LA GIDPQ  + E+  +    Q + F  VA+QW   K+  +  K  
Sbjct: 68  LADARQIRAEKLAILARGIDPQAKEAEEAEQKHVAQESIFLNVAKQWFTLKQASVSTKHA 127

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
           E  WR LE    P + ++PV  + A + I  L PI+++G LETV+R  Q +NEIM YAVN
Sbjct: 128 EDIWRSLEKDILPSIENVPVQDIKARLLIQVLEPIKARGALETVRRLVQRINEIMIYAVN 187

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +G+I ANP +GI + F++ K  HM  ++P E+  L+RT++ +N+   TR L+EWQL T++
Sbjct: 188 TGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTISMSNLSIPTRCLLEWQLLTLI 247

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           RP EAS   W EID+ N+ W IP ERMK  R+H+VPL+ Q L ILE + PISG RE +FP
Sbjct: 248 RPAEASATAWAEIDIENREWHIPAERMKAKRDHIVPLSNQALEILEIMHPISGRREHVFP 307

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
           S  +P+ P +S+TAN AL R+G+  +  AHGLR++AST LNE  F PDVIEA+LAH D+N
Sbjct: 308 SRNDPRKPMNSQTANAALKRIGYAGKLVAHGLRSIASTALNEAEFNPDVIEASLAHYDRN 367

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIEKS 393
           ++R+AYNR  Y++ R+ LM+WW   I++S
Sbjct: 368 EVRRAYNRATYIEQRKDLMAWWGSFIQRS 396