Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., integrase arm-type DNA-binding domain-containing protein from Serratia liquefaciens MT49

 Score =  234 bits (598), Expect = 3e-66
 Identities = 137/400 (34%), Positives = 219/400 (54%), Gaps = 22/400 (5%)

Query: 9   QIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMSLAEA 68
           +++TAKP+ K Y+L+DG  +   V P+ S+ W+ RY+  G++K+  L+ G YP++SLA+A
Sbjct: 7   KVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKM--LALGKYPEVSLADA 64

Query: 69  REKALEARKQLADGIDPQLAKEEQKAKTITEQNA-TFKFVAEQWKATKEGQIKEKTLEGN 127
           R +  EARK L++GIDP  ++ ++  K   EQ A TF+ VA  W A+ + +  E   +  
Sbjct: 65  RTRRDEARKHLSNGIDP--SENKKAVKVEQEQEAITFEVVARDWHASNQ-KWSESHSDRV 121

Query: 128 WRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVNSGV 187
            + LE   F  +G   +++L     +  ++ +E  G LE   R  Q    IM +AV SG+
Sbjct: 122 LKSLEDNLFDAIGKRNIAELKTRDLLTPIKAVEMSGRLEVAARLQQRTTAIMRFAVQSGL 181

Query: 188 IHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMVRPN 247
           I  NP   I       K  H  AL+ + + +L+  + T   + +TR  +E  L   +R +
Sbjct: 182 IDYNPAQEITGAVATAKRQHRAALELNRIPELLHRIDTYTGRPLTRLAVELTLLVFIRSS 241

Query: 248 EASGARWEEIDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAILEAIKPI 295
           E   ARW E+D    +W IP ER             KM   H+VPL+ Q L ILE IK +
Sbjct: 242 ELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALTILEQIKSM 301

Query: 296 SGHREFIFPSSRNPKVPTDSETANKALGRMGF--KDRTTAHGLRALASTTLNEQG-FEPD 352
           SG+RE IF    +P+ P    T NKAL  MG+  K     HG R +A ++L E G +  D
Sbjct: 302 SGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSKD 361

Query: 353 VIEAALAHTDKNQIRKAY-NRTDYLDSRRKLMSWWSEHIE 391
            +E  ++H ++N +R AY ++ ++L  RR ++ WW+++++
Sbjct: 362 AVERQMSHQERNSVRAAYIHKAEHLGERRLMVQWWADYLD 401