Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., Phage integrase, Phage P4-associated from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  249 bits (635), Expect = 1e-70
 Identities = 138/336 (41%), Positives = 189/336 (56%), Gaps = 2/336 (0%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  +I  AKP+   Y L DG  LY  V+ S  ++W F Y  P   K T  S G YP ++
Sbjct: 8   LTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSLGPYPVVT 67

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKE--GQIKEK 122
           LA ARE   + R+ L  GIDP+        +   +   T + VAEQW   K+    + E 
Sbjct: 68  LAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKRTSDLSED 127

Query: 123 TLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYA 182
             +  WR LE++ FP LG+ PV+++   M    L P+E QG+LET++R    +NEI  +A
Sbjct: 128 HAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRLNEIFRFA 187

Query: 183 VNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHT 242
           ++  +I  NP   +   FKK K  +M AL P E+  L+  +  A+I+  TR LIEW+L T
Sbjct: 188 ISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCLIEWELLT 247

Query: 243 MVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFI 302
            VRP EA  ARW +IDM    W IP   MKMNR H VPL+ Q L +L+ ++P+S HR ++
Sbjct: 248 WVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVSRHRPWV 307

Query: 303 FPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRA 338
           FPS R P      +TAN AL RMGF     AHG+R+
Sbjct: 308 FPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRS 343