Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., CP4-57 prophage; integrase (NCBI) from Escherichia coli BW25113

 Score =  357 bits (915), Expect = e-103
 Identities = 182/393 (46%), Positives = 255/393 (64%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  +I+ AKPKD  Y+L DG  L   ++ S S+ WQFRY RP   + T  SFG YP +S
Sbjct: 8   LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           L++AR+   E++  LA  IDPQ  ++EQ   +   +  TF  VAE+W   K+  + E   
Sbjct: 68  LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
           +  WR LE   FP +G I ++++ A   + A++P++++G LETV+R  Q +NE+M YA N
Sbjct: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +G+I A P   I   F+K +  +M +++P ++  L+ T+ TA+I   TR L  WQL T+ 
Sbjct: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           RP EA+ ARW+EID     W IP  RMKMNR+H VPL+   LAILE +KP+SG REFIFP
Sbjct: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGREFIFP 307

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
           S   P  P +S+T N AL R G      +HGLR++AST LNE+GF PDVIEAALAH DKN
Sbjct: 308 SRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDKN 367

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGS 397
           ++R+AYNR+DYL+ RR +M WW++ ++ +  GS
Sbjct: 368 EVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS 400