Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., CPZ-55 prophage; predicted integrase (RefSeq) from Escherichia coli BW25113

 Score =  186 bits (473), Expect = 8e-52
 Identities = 133/399 (33%), Positives = 201/399 (50%), Gaps = 15/399 (3%)

Query: 5   LTARQIQTAKPKDKLYRLSDG--GNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPD 62
           LTA+ I  A+P+DK Y+L+D     L+  V P+ S+ W+FRY    ++ +   + G YP 
Sbjct: 6   LTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYWLNKREFLQ--AIGVYPL 63

Query: 63  MSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEK 122
           ++L EAR +A E+R  +A+GI+P     ++KA       A FK VAE W AT+ G   E 
Sbjct: 64  ITLKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATRVGGWSES 123

Query: 123 TLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYA 182
             +     LE   +P LG   +  +TA   +A L+  E +   E  ++  + + EI  +A
Sbjct: 124 YAKQVRSALEKDVYPVLGKRSIVDITARDVLALLQKKE-RTAPEQARKLRRRIGEIFKFA 182

Query: 183 VNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEM---HDLIRTVATANIQHVTRFLIEWQ 239
           V + ++  NP+A +    K  +  H   +   E+   +  +    +  IQ   R LI   
Sbjct: 183 VITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALERAGSVQIQTAIRLLI--- 239

Query: 240 LHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHR 299
             T +R  E    RWE I++ +    +P E MK  R HVVPL+ Q + +L+     SG+ 
Sbjct: 240 -LTALRTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGYS 298

Query: 300 EFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQG-FEPDVIEAAL 358
            F+FP     K P  +    KAL R+G+K   T HG R   ST LNE G + PD IE  L
Sbjct: 299 AFVFPGRFMDK-PLSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQL 357

Query: 359 AHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGS 397
           AH  K  IR  YN+  YL  RR +M  +++ I+    G+
Sbjct: 358 AHVPKG-IRGVYNQAAYLKQRRAMMQDYADAIDSILAGN 395