Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., integrase from Erwinia amylovora T8

 Score =  255 bits (652), Expect = 1e-72
 Identities = 132/398 (33%), Positives = 218/398 (54%), Gaps = 2/398 (0%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           L ARQ+ TA+ KDK Y+L+DGG LY  V P+ +R W+ +Y+  G++K+  L+ G YPD+S
Sbjct: 3   LNARQVDTARGKDKPYKLADGGGLYLLVNPNGARYWRLKYRAAGKEKL--LAVGVYPDVS 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           L++AR +  EA+K LA G DP   K+ +K   I     +F+ +A +W   K+    E   
Sbjct: 61  LSDARRRRDEAKKILAAGGDPGQEKQAEKQARILAVQNSFEAIALEWHDHKKTNWSEGYA 120

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
                 L    FP +G   ++++     +A LR +E +G+L+ +K+T Q   +I  +AV 
Sbjct: 121 TDILEYLSKDIFPFVGKRAINEIKPAEMLAVLRKMEQRGVLDKLKKTRQACRQIFTHAVI 180

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +G    NP+  +    K  +  H   L   ++   +  ++  +   +TR+     + T +
Sbjct: 181 TGRAENNPVTDLAGALKAPRQKHFPHLNVDQIPPFLNDLSNYSGSIITRYATRLLMITGL 240

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           R  E   + W +ID    +W IP ERMKM R H+VP+++Q  ++LEAI  ++G  +++FP
Sbjct: 241 RTIELRASEWSDIDFDKGIWQIPAERMKMRRPHIVPISSQAKSLLEAIHQLTGRGKYVFP 300

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
              +   P    + N+ + R+G+  + T HG R   ST L+EQG+    +E  LAH DKN
Sbjct: 301 GRNDAGKPMSEASINQVIKRIGYDGKATGHGFRHTMSTILHEQGYNSAWVETQLAHVDKN 360

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAG 402
            IR  YN   YLD RR+++ W++++++    G   V G
Sbjct: 361 SIRGTYNHAQYLDGRREMLQWYADYMDALESGGNVVHG 398