Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 424 a.a., integrase domain-containing protein from Erwinia tracheiphila SCR3

 Score =  392 bits (1006), Expect = e-113
 Identities = 197/403 (48%), Positives = 268/403 (66%), Gaps = 1/403 (0%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           L   +++ +K  ++   L DG  L   V+P  S+ W+FRY +P   K   +SFG YP +S
Sbjct: 8   LNNTEVKNSKATERATILYDGDGLELLVKPGGSKLWRFRYYKPFTRKRAMISFGAYPAVS 67

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQ-IKEKT 123
           L+EAR+   +AR  L+  IDPQ  K+ ++ +  +   +TF+ VA  W  TKE   +   T
Sbjct: 68  LSEARQLREDARLLLSKDIDPQEHKKTEQLRQKSATESTFEKVAGDWFKTKESAGLATHT 127

Query: 124 LEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV 183
           L   WR +  Y FP +GS+P++ +T    I AL P  + G LETVKR +Q +NE+M+YA+
Sbjct: 128 LNDIWRSMSKYVFPHIGSMPIANITVQQFIGALEPTHAAGRLETVKRLSQRINEVMDYAL 187

Query: 184 NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTM 243
           NSG++  NP A I   F K KV H  AL P ++  L++T+A A+I   TR LIEWQL TM
Sbjct: 188 NSGLVSVNPAARIGRTFHKPKVKHRPALPPEQLPLLMKTLAFASIGRQTRCLIEWQLLTM 247

Query: 244 VRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIF 303
           +RP EAS  RW+EID   K W IP  RMKM REH+VPL+ Q LAILE +KPIS HR+++F
Sbjct: 248 IRPAEASTTRWDEIDFAAKEWRIPAGRMKMKREHIVPLSEQALAILEVMKPISKHRDYVF 307

Query: 304 PSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDK 363
           P  RNP  P +S+TAN AL RMGFKD   AHG+RA+AST LNE+GF PDVIEAALAH D 
Sbjct: 308 PGYRNPLEPMNSQTANMALKRMGFKDLLVAHGMRAIASTVLNEKGFPPDVIEAALAHIDT 367

Query: 364 NQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGTGYL 406
           N++R+AYNR  YL+ RR++MSWW +++E +S+G+ S++  G L
Sbjct: 368 NEVRRAYNRAQYLEQRREMMSWWGQYVEAASFGNSSISVIGKL 410