Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., integrase arm-type DNA-binding domain-containing protein from Erwinia tracheiphila SCR3

 Score =  207 bits (528), Expect = 3e-58
 Identities = 132/404 (32%), Positives = 205/404 (50%), Gaps = 25/404 (6%)

Query: 4   NLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDM 63
           +LT  + + AKP +K Y+L+DG  ++  V P   + WQ  Y+  G+ KI   S G YP +
Sbjct: 2   SLTDSKAKNAKPLEKEYKLTDGFGMFLRVTPKGYKYWQMAYRFEGKQKI--FSIGVYPAV 59

Query: 64  SLAEAREKALEARKQLADGIDPQLAK--EEQKAKTITEQNATFKFVAEQWKATKEGQIKE 121
           SLA+ R++  EAR+ LA GIDP   K  E ++ K   ++  +F  VA+ W +TK  +  E
Sbjct: 60  SLADVRQRRDEARRLLAQGIDPNARKQAEVKELKAKRDKTRSFSIVAKAWFSTKT-KWSE 118

Query: 122 KTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNY 181
              +  W++LE Y FP  G   V++L        ++ +E+ G LE   R  Q +  I+ +
Sbjct: 119 DYGDSVWKRLETYVFPATGDKDVAELDTGNLPVPVKKVEALGYLEVAMRIQQYIAAILRH 178

Query: 182 AVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLH 241
           AV   +I  NP   +    +K    H  AL+  E+  L++ +A      +T   I+  L 
Sbjct: 179 AVQQKLIRHNPAYDMEGAVQKPHTEHRPALELEEIPQLLKKIAGYKGHRLTILAIQLNLM 238

Query: 242 TMVRPNEASGARWEEIDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAIL 289
             +R +E   ARW EID+ +KLW+IP++R             KM R+H VPL  Q + IL
Sbjct: 239 IFIRSSELRFARWSEIDVKSKLWVIPEQREAIENVKHSTRGAKMKRKHFVPLCKQAMKIL 298

Query: 290 EAIKPIS---GHRE-FIFPSSRNPKVPTDSETANKALGRMGF--KDRTTAHGLRALASTT 343
           + I+ ++   GH +  IF    +   P    T NKAL  MG+  K     HG R L    
Sbjct: 299 KEIRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYDTKQDICGHGFRTLDVVA 358

Query: 344 LNEQG-FEPDVIEAALAHTDKNQIRKAY-NRTDYLDSRRKLMSW 385
           L E G +  D +E  ++H + N +R AY ++  + D RR ++ W
Sbjct: 359 LIESGLWSEDAVELQMSHKESNSVRAAYTHKARHPDQRRLMLQW 402