Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., tyrosine-type recombinase/integrase from Erwinia tracheiphila SCR3

 Score =  180 bits (456), Expect = 8e-50
 Identities = 131/401 (32%), Positives = 197/401 (49%), Gaps = 24/401 (5%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRS---WQFRYKRPGQDKITYLSFGTYP 61
           LT  + +  KP D+   L  GG     + PS+ +    W  RY  P   K      GTYP
Sbjct: 4   LTDTKARHIKPDDR--PLPHGGITGLTLHPSSVKGRGKWVLRYVSPVTQKRRNAGLGTYP 61

Query: 62  DMSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKAT-KEGQIK 120
           ++ +AEA   A   R+QLA G DP   K+ +  K +     TF+  A Q  A    G   
Sbjct: 62  EIGIAEAARMAQAMREQLATGDDPLELKKAEAEKVVIP---TFEAAARQVHAELSPGWKN 118

Query: 121 EKTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMN 180
           +K ++     LE YAFP LG+ P+ ++T       LRP+    L ET  R  Q ++ +M 
Sbjct: 119 QKHIKQWLSTLEQYAFPSLGTKPLDRITPADVAETLRPVWLT-LAETASRVKQRIHAVMQ 177

Query: 181 YAVNSGVIHANPLAGIRDVFKKH-----KVVHMKALQPHEMHDLIRTVATANIQH-VTRF 234
           +    G   ANP+  +  +         +  H  A+    +   + T   ++ ++ VTR 
Sbjct: 178 WGWTHGHCVANPVDVVDHLLPVQAGINVRTEHQPAMPWRNVPLYVATKVYSDERYNVTRA 237

Query: 235 LIEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKP 294
           L+   + T  R  EA G RW+E+D+  ++WI+P ERMK   +H VPL+ Q +A+LE ++ 
Sbjct: 238 LLLIVILTGARSGEARGMRWQEVDLDKRIWIVPPERMKAGIQHRVPLSLQAVAVLEKMQG 297

Query: 295 ISGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRT-----TAHGLRALASTTLNEQGF 349
           +  H E +FPS R   V +D       L + G    T     TAHG R+      +EQG 
Sbjct: 298 L--HDELVFPSPRKQIVLSDM-VMTTFLRKTGAVSDTPGRLATAHGFRSSFRDWCSEQGI 354

Query: 350 EPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHI 390
             DV E ALAHT KN++  AY+RTD L+ R  +M  W++++
Sbjct: 355 SRDVAERALAHTLKNKVEAAYHRTDLLEQRIPVMQAWADYV 395