Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 383 a.a., tyrosine-type recombinase/integrase from Erwinia tracheiphila SCR3

 Score =  206 bits (525), Expect = 7e-58
 Identities = 120/388 (30%), Positives = 193/388 (49%), Gaps = 9/388 (2%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT +QI  AKPKDK YRL D   LY  V  S  + WQ RYK  G++K+  L+ G YP MS
Sbjct: 2   LTIKQIDAAKPKDKPYRLLDSNGLYLYVPASGKKVWQLRYKIDGKEKV--LTVGKYPLMS 59

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           L EAR+KA  ARK ++ GIDP       KAK ++ ++ +F  +  +W   K+        
Sbjct: 60  LQEARDKAWLARKDVSVGIDPV------KAKKLSVKDNSFGAIYHEWYEHKKQVWSLGYA 113

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
           E   R       P +G + ++++     +  +R  E +G +E   +  +   E+  YA+ 
Sbjct: 114 EELARMFRDDILPMIGGLEINEIEPMKILEVIRRFEERGAMERANKARRRCGEVFRYAIV 173

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +G    NP   + D  K ++  +   L   ++    R +A  +   V+R   +   +T +
Sbjct: 174 TGRAKYNPAPDLADAMKGYRKQNYPFLPADQIPAFNRALAGYSGSIVSRIATQILQYTAL 233

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGH-REFIF 303
           R  E    +W  +D   +   I  E MK  R H+VP++ Q +++LE ++PI+     F+F
Sbjct: 234 RTKELRSMQWANVDFATRTITIAAEVMKGRRIHIVPMSDQVISLLEMLRPITAPVSAFVF 293

Query: 304 PSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDK 363
               + K P         + ++G++   + HG R   ST +NE  +  D IE  LAHTD 
Sbjct: 294 AGRNDKKKPISENAVLLVIRQIGYEGLASGHGFRHQFSTIMNENEWPHDAIERQLAHTDS 353

Query: 364 NQIRKAYNRTDYLDSRRKLMSWWSEHIE 391
             IR  YN   YL+ RR++M WW++ ++
Sbjct: 354 GSIRGIYNHAQYLEKRREMMQWWADWLD 381