Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., integrase arm-type DNA-binding domain-containing protein from Erwinia tracheiphila SCR3

 Score =  246 bits (629), Expect = 7e-70
 Identities = 141/406 (34%), Positives = 216/406 (53%), Gaps = 24/406 (5%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LTARQ++TAKPKDK Y+L+DG  LY  V P  S+ W+ +Y+RP   K   L+FG +P +S
Sbjct: 3   LTARQVETAKPKDKAYKLADGMGLYLEVTPRGSKYWRMKYRRPSDKKEDRLAFGVWPAVS 62

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKT- 123
           LA+AR K  +A++ LA G DP+   E++ A+   E   TF+ +  QW     G +K  T 
Sbjct: 63  LADARAKRDDAKRLLAKGFDPK--AEQKGAQAEAEGAYTFETITRQWYG---GCLKRWTP 117

Query: 124 --LEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNY 181
                  R LE Y FP +G   + +L     +AA+   +S    +  KR  Q +  +M Y
Sbjct: 118 THARAVLRSLEHYVFPHIGGADIRQLKTRQLLAAVNSADSANKHDVAKRLRQRITSVMRY 177

Query: 182 AVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLH 241
           AV +G+I +NP   +    +  K  H   L      +L+  ++  + + VTR  +E  L 
Sbjct: 178 AVQNGLIDSNPALDMAGAVESAKTKHRPTLPHARFGELLSRISNYSGRPVTRLAVELTLL 237

Query: 242 TMVRPNEASGARWEEIDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAIL 289
           T +R +E   A W+E D    +W +P +R            MKM   HVVPL+ Q LA+L
Sbjct: 238 TFLRSSELRFAWWDEFDFDRAVWNVPAKRPEIEGVRYSWRGMKMGTPHVVPLSKQALALL 297

Query: 290 EAIKPISGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRTTA--HGLRALASTTLNEQ 347
           E +K  SG+   +FP   NP+      T NKAL  MG+  +T A  HG R +A   + E 
Sbjct: 298 EELKEFSGNNSRLFPGDHNPQQVMSENTVNKALRTMGYDTKTEACGHGFRTMACGAMAES 357

Query: 348 G-FEPDVIEAALAHTDKNQIRKAYNRT-DYLDSRRKLMSWWSEHIE 391
           G +  + +E  ++H ++N +R  Y  T +YL+ RR +M WW+++++
Sbjct: 358 GLWSREAVEMQMSHQERNDVRAPYVHTAEYLEERRLMMQWWADYLD 403