Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., integrase from Escherichia coli ECRC99

 Score =  270 bits (690), Expect = 6e-77
 Identities = 144/390 (36%), Positives = 218/390 (55%), Gaps = 2/390 (0%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  +++TAKPK++ Y+L+DGG +Y  +  + S+ W+ +Y+  G++K+  LS G YPD++
Sbjct: 3   LTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKM--LSIGVYPDVT 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LA+AREK  EARK LA G DP  AK+E+K         TF+ VA +W  TK  +   +  
Sbjct: 61  LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR 120

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
           +      E   FP +G  P++++     + ALR +E +G LE +++  Q   E+  YA+ 
Sbjct: 121 DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +G    NP   +       K VH   L  +E+   +  +A      +T+   +  + T V
Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV 240

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           R  E   A WE+ID   KLW IP E MKM R H+VP + Q +A+ + ++PIS H   +F 
Sbjct: 241 RTQELRFAHWEDIDFEAKLWEIPAEVMKMKRPHIVPPSEQVIALFKQLEPISKHHPLVFI 300

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
              +P+ P   E+ N+ +  +G+K R T HG R   ST L+EQGF    IE  LAH DKN
Sbjct: 301 GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN 360

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIEKSS 394
            IR  YN   YLD RR++M W++++I+  S
Sbjct: 361 SIRGTYNHAQYLDGRREMMQWYADYIDSLS 390