Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., prophage integrase IntS from Escherichia coli ECRC62

 Score =  198 bits (503), Expect = 3e-55
 Identities = 117/392 (29%), Positives = 193/392 (49%), Gaps = 15/392 (3%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT +QI+ AKPK+K YRL DG  LY  V  S  + WQ RYK  G++KI  L+ G YP M+
Sbjct: 2   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKI--LTVGKYPLMT 59

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           L EAR+KA  ARK ++ GIDP       KAK  +  N +F  + ++W   K+        
Sbjct: 60  LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
               +  +    P +G + +  +     +  +R  E +G +E   +  +   E+  YA+ 
Sbjct: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +G    NP   + D  K ++  +   L   ++    + +AT +   V+    +   +T +
Sbjct: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAI----KPISGHRE 300
           R  E    +W+ +D  N++  I    MK  + HVVP++ Q + +L  +    KP+S   E
Sbjct: 234 RTKELRSMQWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS---E 290

Query: 301 FIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAH 360
           F+F    + K P         + ++G++   + HG R   ST +NE  +  D IE  LAH
Sbjct: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350

Query: 361 TDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEK 392
            +   +R  YN   YLD RR++M WW++ +++
Sbjct: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382