Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 353 a.a., Prophage integrase IntZ from Escherichia coli ECRC62

 Score =  167 bits (424), Expect = 3e-46
 Identities = 120/347 (34%), Positives = 173/347 (49%), Gaps = 12/347 (3%)

Query: 50  DKITYL-SFGTYPDMSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVA 108
           DK  YL + G YP +SL EAR++A E+R  +A+GI+P     ++KA       A FK VA
Sbjct: 2   DKKEYLQAIGVYPLISLKEARKRATESRSLIANGINPVEEARKEKAIDALNMAAGFKTVA 61

Query: 109 EQWKATKEGQIKEKTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETV 168
           E W AT+     E   +     LE   +P LG   +  +TA   +A L+  E +   E  
Sbjct: 62  EDWLATRVSGWSESYTKQVRSALEKDVYPVLGKRSIVDITARDVLALLQKKE-RTAPEQA 120

Query: 169 KRTAQLMNEIMNYAVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEM---HDLIRTVAT 225
           ++  Q + EI  +AV + +++ NP+A +    K  +  H   LQ  E+   +  +    +
Sbjct: 121 RKLRQRIGEIFKFAVITELVNRNPVADLDSALKARRPGHNAWLQISEIPPFYKALERAGS 180

Query: 226 ANIQHVTRFLIEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQT 285
             IQ   R LI   L T     E    RWE +D+ +    +P E MK  R HVVPL+ Q 
Sbjct: 181 VQIQTAIRLLILSALRTA----ELRLMRWEWVDLESATITLPAEVMKARRPHVVPLSRQA 236

Query: 286 LAILEAIKPISGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLN 345
           + +L+     SG+  F+FP     K P  +    KAL R+GFK   T HG R   ST LN
Sbjct: 237 VELLQDQFTRSGYSAFVFPGRFMDK-PLSASAILKALERIGFKSTVTGHGWRTTFSTALN 295

Query: 346 EQG-FEPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIE 391
           E G + PD +E  LAH  K  IR  YN+  YL  RR +M  +++ I+
Sbjct: 296 ESGRYNPDWVEIQLAHVPKG-IRAVYNQAAYLKQRRAMMQDYADAID 341