Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., integrase from Escherichia coli ECRC62

 Score =  291 bits (746), Expect = 2e-83
 Identities = 161/401 (40%), Positives = 222/401 (55%), Gaps = 6/401 (1%)

Query: 1   MANNLTARQIQTAKPKDKLYRLSDGGNLYFCVRP---SNSRSWQFRYKRPGQDKITYLSF 57
           +A  LT  +I++ KP DK   L DG  L   + P      ++W FRY  P   K T +S 
Sbjct: 4   IAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKKNWYFRYAVPVSKKRTKMSL 63

Query: 58  GTYPDMSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQW--KATK 115
           GTYP ++LA+AR    E    LA+G+DPQ+    +     +    T + VA +W  +  K
Sbjct: 64  GTYPHLTLAKARALRDENLSLLANGVDPQVHNNNKAKALKSAIEHTLQAVARKWLDEKVK 123

Query: 116 EGQIKEKTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLM 175
              I +   E  WR LE   FP LG  P+ ++   M    L PIE +G+LET++R    +
Sbjct: 124 TSGISQDHAEDIWRSLERNIFPTLGDTPIKEIRPKMLKQHLDPIEKRGVLETLRRIISRL 183

Query: 176 NEIMNYAVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFL 235
           NEI  YA    +I  NP   +   F K K  +M AL P E+   +  +  A+++  TR L
Sbjct: 184 NEIFRYAATEELIEFNPADNLAQRFSKPKKQNMPALPPTELPRFLTVLNNASVRMETRLL 243

Query: 236 IEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPI 295
           IEWQL T VRP EA   RW +ID+   +W IP E MKM + H VPL+ + L +L+ +K I
Sbjct: 244 IEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLMKAI 303

Query: 296 SGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQG-FEPDVI 354
           SGHRE++FPS + P      +TAN A+ RMGF     AHG+R++A T   E G F  DV+
Sbjct: 304 SGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRTDVL 363

Query: 355 EAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSY 395
           EAALAH+ K++I  AYNR +YL  R  LM WWS+ +    Y
Sbjct: 364 EAALAHSKKDEIIAAYNRAEYLTERVILMQWWSDFVSSQKY 404