Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., integrase from Escherichia coli ECRC62

 Score =  261 bits (667), Expect = 3e-74
 Identities = 148/390 (37%), Positives = 207/390 (53%), Gaps = 2/390 (0%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LTARQ++TA+PK+K Y+LSD   LY  V+ + +R W+ +Y+  G++K   L+ G YPD+S
Sbjct: 3   LTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAGKEK--KLALGVYPDVS 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LAEAR K  +ARK +++G DP   K ++K         TF  +A +W   K     E   
Sbjct: 61  LAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSESYA 120

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
                 L+   FP LG   V+ +     +  LR IE +G LE +++  Q  N+I  YA+ 
Sbjct: 121 RSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYAIA 180

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +G    NP + +       K  H   L+  E+   +R +A  +   VTR      L T +
Sbjct: 181 TGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTRMATNLLLLTGL 240

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           R  E   A W EID  N LW IP+ RMKM R+HVVPL+ Q   IL  +K  SG    +FP
Sbjct: 241 RTIELRSAEWSEIDFDNALWTIPESRMKMRRKHVVPLSRQATDILLQLKTFSGQYRLVFP 300

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
              +   P    + N  L R+G+  R T HG R   ST L+EQGF    IE  LAH DKN
Sbjct: 301 GRCDINKPMSEASINMVLKRIGYDGRATGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN 360

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIEKSS 394
            IR  YN   YLD RR++M W++++I+  S
Sbjct: 361 AIRGTYNHAQYLDGRREMMQWYADYIDSLS 390