Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., integrase from Escherichia coli ECOR38

 Score =  235 bits (600), Expect = 2e-66
 Identities = 132/403 (32%), Positives = 220/403 (54%), Gaps = 21/403 (5%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  +I+ AKP DK Y+L+DG  ++  V P+ SR W+ RY+  G++K   L+ G YP++S
Sbjct: 3   LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKT--LALGVYPEVS 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           L+EAR K  EARK +++GIDP   ++++  K + +   +F+ +A +W A+ + Q  +   
Sbjct: 61  LSEARTKRDEARKLISEGIDP--CEQKRVKKVVPDLQLSFEHIARRWHASNK-QWAQSHS 117

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
           +   + LE + FP +G+  ++ L  P  +  +R  E++ + E   R  Q ++ +M YAV 
Sbjct: 118 DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ 177

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           SG+I  NP   +       K  H  AL+   + +L+  +     Q VTR  +   L   +
Sbjct: 178 SGIIRYNPALDMAGALTTVKRQHRPALELSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI 237

Query: 245 RPNEASGARWEEIDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAILEAI 292
           R +E   ARW EID+ N +W IP ER             KM   H+VPL+ Q +AIL  +
Sbjct: 238 RSSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL 297

Query: 293 KPISGHREFIFPSSRNPKVPTDSETANKALGRMGF--KDRTTAHGLRALASTTLNEQG-F 349
           +  +G    IF  + +P+ P    T NKAL  MG+        HG RA+A + L E G +
Sbjct: 298 QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW 357

Query: 350 EPDVIEAALAHTDKNQIRKAY-NRTDYLDSRRKLMSWWSEHIE 391
             D +E  ++H ++N +R AY ++ ++L+ RR ++ WW++ ++
Sbjct: 358 SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD 400