Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., site-specific integrase from Dickeya dianthicola ME23

 Score =  149 bits (376), Expect = 2e-40
 Identities = 109/402 (27%), Positives = 188/402 (46%), Gaps = 13/402 (3%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  +++  KP++KLY++SD   LY  V  S S S+++ Y+  G+ +   +       +S
Sbjct: 2   LTDTKLKNLKPEEKLYKVSDRDGLYVAVLTSGSVSFRYDYRINGRRETLVIGQYGRDGIS 61

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LAEARE+ + A+K L  G  P  AK +   K    +  TF    + +   K   + + T 
Sbjct: 62  LAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE--TFAVHTDHYM--KHIVLADSTR 117

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
                 +E    P LG+  ++++T  M       I  +G   T  +  ++++ +  +A +
Sbjct: 118 TMKESVIERDIMPVLGNKMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHAND 177

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
            G    NP + I+           + LQP E+    RT+ T       +  ++  L TMV
Sbjct: 178 RGHGLFNPASDIKPSSIAMFKPRDRCLQPEEVGIFFRTLDTVAAMATMKLALKLVLLTMV 237

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           R NE   A W+E+D     W+IP +RMK +R HV+ L  Q   ++  ++  +G  E++ P
Sbjct: 238 RKNEFINATWKEVDFKKWEWVIPSDRMKGSRAHVIYLPRQAQDLMVGLQMCAGGSEYLLP 297

Query: 305 SSRNPKVPTDSETANK-------ALGRMGFK-DRTTAHGLRALASTTLNEQGFEPDVIEA 356
              +   P  +   N+       A    G+  +    H +R  AST L+E G+  D IE 
Sbjct: 298 GRYSVIRPLSNSALNRLITTTVEAAQAAGYNLEHFAVHDMRRTASTLLHEAGYPSDWIEK 357

Query: 357 ALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSY 398
           ALAH ++  +R  YN+ +Y   R  ++  W++ I+    G +
Sbjct: 358 ALAH-EQRGVRSVYNKAEYARQRAYMLQQWADMIDSWIAGEH 398