Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., integrase arm-type DNA-binding domain-containing protein from Dickeya dianthicola ME23

 Score =  236 bits (601), Expect = 1e-66
 Identities = 144/405 (35%), Positives = 214/405 (52%), Gaps = 22/405 (5%)

Query: 4   NLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDM 63
           +L   +I+  KP     +LSD   LY  V+P+ SR W FRY   G++  T ++ G YP +
Sbjct: 2   SLNDTKIRNLKPPVTPIKLSDSHGLYLHVKPTGSRLWYFRYYFFGKE--TRIALGAYPLI 59

Query: 64  SLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKT 123
           SL+EAR+K  E RK LA  I+P   +  +KA     +N  FK VA  W  +      E  
Sbjct: 60  SLSEARQKRDELRKLLAQNINPTQQRAAEKAARSPAKN--FKTVALSWHKSNRTW-SENH 116

Query: 124 LEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV 183
                  +  + FP +G +P+++L     I  L+ IE +GLLE   RT Q M  IM +AV
Sbjct: 117 AARLLASMNNHIFPIIGHLPITELKTRHFIDLLKGIEKKGLLEVAARTRQHMCNIMRHAV 176

Query: 184 NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANI-QHVTRFLIEWQLHT 242
           +  +I  NP A +  +       H  AL    + +L+ ++      + +TR  +   LH 
Sbjct: 177 HQELIEHNPAANLDGIIAPPVKRHYPALLLERLPELLASIEDYKQGRELTRLAVSLTLHL 236

Query: 243 MVRPNEASGARWEEIDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAILE 290
            +R +E   ARW EID  NK+W IP  R             KM   H+VPL+ Q++ IL+
Sbjct: 237 FIRSSELRFARWSEIDFRNKIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSRQSITILK 296

Query: 291 AIKPISGHREFIFPSSRNPKVPTDSETANKALGRMGF--KDRTTAHGLRALASTTLNEQG 348
            I+ ISGH+E IFP   NP  P    T NKAL  MG+  KD    HG RA+A + L E G
Sbjct: 297 QIREISGHQELIFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESG 356

Query: 349 -FEPDVIEAALAHTDKNQIRKAY-NRTDYLDSRRKLMSWWSEHIE 391
            +  D +E  ++H ++N +R AY ++ +YLD+R+ +M WWS++++
Sbjct: 357 LWAQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLD 401