Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., integrase arm-type DNA-binding domain-containing protein from Dickeya dianthicola ME23

 Score =  233 bits (595), Expect = 6e-66
 Identities = 141/405 (34%), Positives = 211/405 (52%), Gaps = 22/405 (5%)

Query: 4   NLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDM 63
           +L   +I+  KP  K +++SD   LY  + P  SR W  +Y+     K + L  GTYPD+
Sbjct: 2   SLNDSKIRNLKPSAKPFKVSDSHGLYLLINPGGSRLWYLKYRI--NRKESRLGLGTYPDV 59

Query: 64  SLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKT 123
           SLA+AR++    RK LA  I+P   +  +K     E++  F+ VA  W  +      E  
Sbjct: 60  SLADARQQRDGIRKLLAQNINPAHQRAAEKVSRSPEKS--FRDVALDWHKSNRTW-SENH 116

Query: 124 LEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV 183
                  +  + FP +G +PV++L A   I  L+ IE +GLLE   RT Q +  IM YAV
Sbjct: 117 ATRLLASMNNHLFPVIGHLPVTELKARHFIDLLKGIEKKGLLEVAARTRQHLCNIMRYAV 176

Query: 184 NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANI-QHVTRFLIEWQLHT 242
           +  +I  NP A +  +       H  ALQ   + +L+ ++      + +TR  +   LH 
Sbjct: 177 HQELIEHNPAANLDGIIAPPVKRHYPALQLERLPELLASIEDYKQGRELTRLAVSLTLHL 236

Query: 243 MVRPNEASGARWEEIDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAILE 290
            +R +E   ARW EID  N +W IP  R             KM   H+VPL+ Q +AIL 
Sbjct: 237 FIRSSELRFARWSEIDFRNHIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSRQAIAILR 296

Query: 291 AIKPISGHREFIFPSSRNPKVPTDSETANKALGRMGF--KDRTTAHGLRALASTTLNEQG 348
            I+ ISGH+  IFP   NP  P    T NKAL  MG+  KD    HG RA+A + L E G
Sbjct: 297 QIQEISGHQVLIFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESG 356

Query: 349 -FEPDVIEAALAHTDKNQIRKAY-NRTDYLDSRRKLMSWWSEHIE 391
            +  D +E  ++H ++N +R AY ++ +YLD+R+ +M WWS++++
Sbjct: 357 LWSQDAVERQMSHLERNSVRAAYIHKAEYLDARQAMMQWWSDYLD 401