Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., tyrosine-type recombinase/integrase from Dickeya dianthicola ME23

 Score =  359 bits (922), Expect = e-104
 Identities = 180/390 (46%), Positives = 255/390 (65%), Gaps = 4/390 (1%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  ++Q AK  DK   L DG  L+  V+ +  + W+FRY++P   + T + FG YP +S
Sbjct: 8   LTHIEVQKAKAADKDLTLHDGNGLFLLVKTTGKKLWRFRYQKPTTGQRTMIGFGAYPALS 67

Query: 65  LAEAREKALEARKQLADGIDPQ--LAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEK 122
           LA+ R    E    LA GIDPQ  +AKE ++A+   E  + F  VA  W   K+  +   
Sbjct: 68  LADVRAMRDEKLSLLAKGIDPQEKVAKEVEEAQIAVE--SLFINVARSWFTLKQATVSTD 125

Query: 123 TLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYA 182
             +  WR LE    P + +IPV ++ A   I AL PI+++G LETV+R  Q +NEIM YA
Sbjct: 126 HAKDIWRSLEKDVLPAIENIPVQQIKARTLIQALEPIKARGALETVRRLVQRINEIMVYA 185

Query: 183 VNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHT 242
           VN+G+I ANP +GI   F++ K  HM  ++P E+  L+RT+A +N+   TR L+EWQL T
Sbjct: 186 VNTGLIDANPASGIGMAFERPKKQHMPTIRPEELPALMRTIAMSNLSIPTRCLLEWQLLT 245

Query: 243 MVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFI 302
           ++RP EAS   W EID+  K W IP ERMK  R+H+VPL+ Q L +L+ ++PISG+R+++
Sbjct: 246 LIRPAEASATAWAEIDIEKKTWSIPAERMKAKRDHIVPLSEQALELLDIMRPISGNRDYV 305

Query: 303 FPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTD 362
           FPS  +PK P +S+TAN AL R+G+  +  AHGLR++AST +NE GF PDVIE+ALAH D
Sbjct: 306 FPSRNDPKKPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNPDVIESALAHCD 365

Query: 363 KNQIRKAYNRTDYLDSRRKLMSWWSEHIEK 392
           KN++R+AYNR+ YL+ R++LM WW   + K
Sbjct: 366 KNEVRRAYNRSTYLEQRKELMDWWGLGVHK 395