Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., tyrosine-type recombinase/integrase from Dickeya dianthicola ME23

 Score =  229 bits (583), Expect = 2e-64
 Identities = 134/403 (33%), Positives = 212/403 (52%), Gaps = 21/403 (5%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT   I+ AKP DK Y+LSD   LY  ++P+ S+ W  +Y+  G++K   L+FG YP +S
Sbjct: 3   LTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEK--KLAFGAYPTVS 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LA AR+   EAR  L+ G DP + K+  K     +   TF+ +A QW A    +  E   
Sbjct: 61  LASARKLREEARTILSAGDDPGVKKQHDKQAK--KNGNTFEAIARQWVAANI-RWSEAHA 117

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
               R LEL+ FP +G++ V+ L     +  LR  E +G LET  R  Q    IM YAV 
Sbjct: 118 AKVLRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQ 177

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
            G+I +NP   +          H  AL    + +L+  +   + + +TR  ++  L   +
Sbjct: 178 EGLIASNPANDLCGAITPPPKNHYPALPLERLPELLERIEGYSGRLLTRLAVQLNLLIFI 237

Query: 245 RPNEASGARWEEIDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAILEAI 292
           R +E   ARW EID+ N +W +P +R             KM   H+VPL+ Q + +L+ +
Sbjct: 238 RSSELRFARWTEIDLDNAMWTLPAQREPITGVRHSERGAKMKTPHLVPLSKQAVTVLKQL 297

Query: 293 KPISGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRT--TAHGLRALASTTLNEQG-F 349
           K +SG+ + +FP   + + P    T NKAL  MG+  +     HG R +A + L E G +
Sbjct: 298 KLLSGNGDLLFPGDHDARKPMSENTINKALRTMGYDTQADICGHGFRTIACSALIESGRW 357

Query: 350 EPDVIEAALAHTDKNQIRKAY-NRTDYLDSRRKLMSWWSEHIE 391
             D +E  ++H ++N +R AY ++ ++LD R ++M WWS++++
Sbjct: 358 SKDAVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLD 400