Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., tyrosine-type recombinase/integrase from Dickeya dianthicola ME23

 Score =  231 bits (590), Expect = 2e-65
 Identities = 137/405 (33%), Positives = 211/405 (52%), Gaps = 22/405 (5%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT    +TAKP++K Y+L+D   LY  V P+ S+ W  +Y+  G++  + ++FG YP +S
Sbjct: 3   LTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYRFDGKE--SRIAFGAYPLIS 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LA+AREK  E R  L++GI P   +EE+K +     N TF+ VA  W          +T 
Sbjct: 61  LAKAREKRDEVRLLLSEGIHPTEKREEEKEQAQDALN-TFEKVARDWHRNISQNRWSQTH 119

Query: 125 EGN-WRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV 183
            G  WR +E    P +G   ++ L     +  L+ +E  G L+   R  Q + +IM YAV
Sbjct: 120 AGRVWRDMERNILPAIGQRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRITDIMRYAV 179

Query: 184 NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTM 243
            + +I  NP   +       K  H  AL+  ++ D +  +     + +TR  ++  L   
Sbjct: 180 QNDLIERNPAQDLTGAIAAPKATHRPALKLDKLPDFLARIERYKGRALTRLALKLTLCVF 239

Query: 244 VRPNEASGARWEEIDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAILEA 291
           +R +E   ARW EID    +W IP ER             KM  EH+VPL+ Q LA+LE 
Sbjct: 240 IRSSELRFARWPEIDFKRAMWTIPPEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLEE 299

Query: 292 IKPISGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRTT---AHGLRALASTTLNEQG 348
           IK ISG  E IFP    P  P    T N AL  MG+ D TT    HG R +A + L E G
Sbjct: 300 IKAISGVHELIFPGDHRPTKPMSENTINSALRTMGY-DTTTEVCGHGFRTMACSALVESG 358

Query: 349 -FEPDVIEAALAHTDKNQIRKAY-NRTDYLDSRRKLMSWWSEHIE 391
            +  D +E  ++H ++N +R AY ++ ++L+ R+ ++ WW+++++
Sbjct: 359 QWSRDAVERQMSHQERNGVRAAYIHKAEHLEERKLMLQWWADYLD 403