Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., integrase arm-type DNA-binding domain-containing protein from Dickeya dadantii 3937

 Score =  268 bits (685), Expect = 2e-76
 Identities = 145/405 (35%), Positives = 224/405 (55%), Gaps = 23/405 (5%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           L ARQ++TAKPK+K Y+++DGG LY  + P  S+ W+ +Y+RP   K   L+FG +P ++
Sbjct: 3   LNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPTVT 62

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKE--GQIKEK 122
           LA+AR K  EA+K L  GIDP+  ++E +A+T      TF+ +A QW A+ +  G     
Sbjct: 63  LADARAKRDEAKKLLVQGIDPKAEQKEAQAETAGAY--TFETIARQWHASNKRWGDYHRA 120

Query: 123 TLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYA 182
            +    R LELY FP +G+  + KL     +A ++ +++ G  +  +R  Q +  IM YA
Sbjct: 121 RV---MRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRVTAIMRYA 177

Query: 183 VNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHT 242
           V +  I +NP + +       K  H  AL P  +H+ +  +A    + +TR  +E  L T
Sbjct: 178 VQNDYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTLLT 237

Query: 243 MVRPNEASGARWEEIDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAILE 290
            VR +E   A+W E D     W +P +R            MKM  EH+VPL+ Q +A+LE
Sbjct: 238 FVRSSELRFAQWHEFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVALLE 297

Query: 291 AIKPISGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRT--TAHGLRALASTTLNEQG 348
            +K ISG  + +FP   +P+      T N AL  MG+  +T    HG R +A   L E G
Sbjct: 298 QLKAISGDNKCLFPGDHDPEKVMSENTVNNALRAMGYDTQTEVCGHGFRTMARGALGESG 357

Query: 349 -FEPDVIEAALAHTDKNQIRKAYNRT-DYLDSRRKLMSWWSEHIE 391
            +  D IE  L+H+++N +R AY  T +YLD RR ++ WW++++E
Sbjct: 358 LWSDDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADYLE 402