Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., putative integrase from Escherichia coli BL21

 Score =  193 bits (490), Expect = 9e-54
 Identities = 121/380 (31%), Positives = 192/380 (50%), Gaps = 21/380 (5%)

Query: 28  LYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMSLAEAREKALEARKQLADGIDPQL 87
           ++  V P+ S+ W+ +Y+  G+ K+  L+ G YP+++LA+AR +  E RK LA+G+DP  
Sbjct: 1   MHLLVHPNGSKYWRLQYRYEGKQKM--LALGVYPEITLADARVRRDETRKLLANGVDPGD 58

Query: 88  AKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTLEGNWRKLELYAFPKLGSIPVSKL 147
            K+  K +    +  TFK VA +W  T + +  E       + LE   F  LG   +++L
Sbjct: 59  KKKNDKVEQ--SKARTFKEVAIEWHGTNK-KWSEDHAHRVLKSLEDNLFAALGERNIAEL 115

Query: 148 TAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVNSGVIHANPLAGIRDVFKKHKVVH 207
                +A ++ +E  G LE   R  Q    IM YAV SG+I  NP   +          H
Sbjct: 116 KTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQH 175

Query: 208 MKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMVRPNEASGARWEEIDMVNKLWIIP 267
             AL+   + +L+  + +   + +TR+ IE  L   +R +E   ARW EID    +W IP
Sbjct: 176 RPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIP 235

Query: 268 KER------------MKMNREHVVPLTAQTLAILEAIKPISGHREFIFPSSRNPKVPTDS 315
            ER             KM   H+VPL+ Q LAIL+ IK   G  + IF    +   P   
Sbjct: 236 PEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSE 295

Query: 316 ETANKALGRMGF--KDRTTAHGLRALASTTLNEQG-FEPDVIEAALAHTDKNQIRKAY-N 371
            T N AL  MG+  K     HG R +A ++L E G +  D +E  ++H  +N +R AY +
Sbjct: 296 NTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIH 355

Query: 372 RTDYLDSRRKLMSWWSEHIE 391
           + ++L+ RR ++ WW++ ++
Sbjct: 356 KAEHLEERRLMLQWWADFLD 375