Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Int from Escherichia coli BL21

 Score =  274 bits (700), Expect = 4e-78
 Identities = 148/391 (37%), Positives = 225/391 (57%), Gaps = 4/391 (1%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  +++TAKPKDK Y+L+DGG +Y  +  + S+ W+ +Y+  G++K+  LS G YPD++
Sbjct: 3   LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKM--LSIGVYPDVT 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQK-AKTITEQNATFKFVAEQWKATKEGQIKEKT 123
           LA+AREK  EARK LA G DP  AK+E+K A+ ++ QN TF+ +A +W  +K  +   + 
Sbjct: 61  LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQN-TFEAIAREWHQSKADRWSLRY 119

Query: 124 LEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV 183
            +      E   FP +G  P++++     + ALR +E +G LE +++  Q   E+  YA+
Sbjct: 120 RDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAI 179

Query: 184 NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTM 243
            +G    NP   +       K VH   L  +E+   +  +A      +T+   +  + T 
Sbjct: 180 VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG 239

Query: 244 VRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIF 303
           VR  E   ARWE+ID   KLW IP E MKM R H+VPL+ Q + + + ++PIS H   +F
Sbjct: 240 VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF 299

Query: 304 PSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDK 363
               +P+ P   E+ N+ +  +G+K R T HG R   ST L+EQGF    IE  LAH DK
Sbjct: 300 IGRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK 359

Query: 364 NQIRKAYNRTDYLDSRRKLMSWWSEHIEKSS 394
           N IR  YN   YLD RR++M W++++I+  S
Sbjct: 360 NSIRGTYNHALYLDGRREMMQWYADYIDSLS 390