Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., integrase from Escherichia coli BL21

 Score =  148 bits (374), Expect = 2e-40
 Identities = 88/276 (31%), Positives = 144/276 (52%), Gaps = 17/276 (6%)

Query: 32  VRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMSLAEAREKALEARKQLADGIDPQLAKEE 91
           V P++SR W+ RY+  G++K   L+ G YP++SL+EAR K  EARK ++ GIDP   +++
Sbjct: 5   VHPNSSRYWRLRYRILGKEKT--LALGVYPEVSLSEARAKRDEARKLISAGIDP--CEQK 60

Query: 92  QKAKTITEQNATFKFVAEQWKATKEGQIKEKTLEGNWRKLELYAFPKLGSIPVSKLTAPM 151
           +  K + +   +F+ +A +W A+ + Q  +   +   + LE + FP +G+  ++KL  P 
Sbjct: 61  RAKKVVPDLQLSFEHIARRWHASNK-QWTQSHSDKVLKSLETHVFPFIGNRDITKLNTPD 119

Query: 152 AIAALRPIESQGLLETVKRTAQLMNEIMNYAVNSGVIHANPLAGIRDVFKKHKVVHMKAL 211
            +  +R  E++ + E   R  Q ++ +M YAV SG+I  NP   +       K  H  AL
Sbjct: 120 LLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPAL 179

Query: 212 QPHEMHDLIRTVATANIQHVTRFLIEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKER- 270
               + +L+  + +   Q VTR  +   L   +R +E   ARW EID+ N +W IP ER 
Sbjct: 180 DLSRLPELLSRIGSYKGQPVTRLAVMLNLLVFIRSSELRYARWSEIDIENAMWTIPAERE 239

Query: 271 -----------MKMNREHVVPLTAQTLAILEAIKPI 295
                       KM   H+VPL+ Q +  L    P+
Sbjct: 240 PLPGVNFSHRGSKMRTPHLVPLSKQAVPSLPPAFPV 275