Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., phage-related integrase from Agrobacterium fabrum C58

 Score =  149 bits (376), Expect = 1e-40
 Identities = 125/396 (31%), Positives = 187/396 (47%), Gaps = 27/396 (6%)

Query: 3   NNLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPD 62
           N L+AR ++T     K  R  DGG LY  V  S ++ W F Y+R   D++  +  G    
Sbjct: 6   NKLSARAVETIS---KPGRHGDGGGLYLVVDKSGAKRWVFLYRR--SDRLREMGLGGVHS 60

Query: 63  MSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEK 122
           ++LA+ARE A +AR +L  G+DP  AK      T      TF   A+ + A  + Q +  
Sbjct: 61  VTLAKARELAQDARTKLQAGVDPIQAKH-----TAPPLVPTFGDEADDFIAAMKPQFRNA 115

Query: 123 TLEGNWRK-LELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNY 181
                W   L  YA P    + ++++T    +  L+PI      ET  R    +  +++ 
Sbjct: 116 KHVAQWEMTLREYAAPLRQKL-ITEVTTADVLGVLKPIWLTKS-ETASRVRGRIERVLDA 173

Query: 182 AVNSGV-IHANPLA--GIRDVF--KKHKVV--HMKALQPHEMHDLIRTVATANIQHVTRF 234
           A   G+    NP    G  D    K+ K+   H KA+   ++   I  +     + V   
Sbjct: 174 AKAKGLRTGENPALWRGHLDKLLPKRRKLARGHHKAMPYADVAAFI--IELRKREAVAAT 231

Query: 235 LIEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKP 294
            +E+ + T  R  E  GA+W EID  +K+W +P ERMK  REH VPL+++T+ IL+ +  
Sbjct: 232 ALEFTILTAARSGETLGAKWHEIDWKDKIWTVPAERMKAAREHRVPLSSRTITILKKLAE 291

Query: 295 I-SGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNE-QGFEPD 352
             S    F+FP  + P  P      +  L RM  +   T HG R+       E   F  D
Sbjct: 292 FGSDENSFVFPGQK-PGKPLSVMAMDMVLRRM--EVDVTVHGFRSSFRDWCGEVSNFPRD 348

Query: 353 VIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSE 388
           V EAALAH   ++  +AY R D L+ RRKLM+ W +
Sbjct: 349 VAEAALAHVVGDKTERAYRRGDALEKRRKLMAAWEK 384