Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., Prophage integrase IntS from Acinetobacter radioresistens SK82

 Score =  241 bits (614), Expect = 4e-68
 Identities = 133/387 (34%), Positives = 210/387 (54%), Gaps = 5/387 (1%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  +++  KP +K  R SD   +Y  V PS    W+ +++  G++ I   S GTYP+ S
Sbjct: 2   LTDVKVRKLKPLEKKARYSDEKGMYLEVTPSGGMYWRMKFRFNGKENI--FSIGTYPETS 59

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LA+AR    EAR +L DGI+P  AK+++K +   ++N  FK +A +W   ++  IKE T 
Sbjct: 60  LAQARRIRDEARLKLKDGINPNEAKKQKKQQA--DENMLFKALAMEWMEDRKAVIKENTY 117

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
             +    E   FP LG++P+ ++     +A  + IE +G  E  KR+  L   I  +A+ 
Sbjct: 118 LRDLSVFEKDLFPTLGNMPIDQIRGKDVLACAKKIEERGAQEMAKRSIPLAGRIFRFAIR 177

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
            G+I  +P   +++  K  KV HM  L   E    +  +   +   + +  I+    T V
Sbjct: 178 KGLIENDPTPHLQEALKPRKVKHMARLDISEFPPFLERMDRYHGNPMIKTAIQLMTLTFV 237

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           R  E     W EID    LW IP E+MKM + H+VPL+ Q +A++E ++P++G+++++F 
Sbjct: 238 RTAELRMMEWSEIDFDTHLWRIPAEKMKMAQPHIVPLSKQAIALIEGLRPLTGNKQYVFY 297

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
           +    K P  S      +  MG+  + T HG R LASTTL+EQG+  D IE  LAH   N
Sbjct: 298 NHSTAK-PMSSNALLCVIRTMGYNGKMTGHGFRGLASTTLHEQGYMHDAIEIQLAHRVGN 356

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIE 391
            + +AYN   +L+ R K+M  WS+ I+
Sbjct: 357 AVSQAYNHAQHLEYRIKMMQEWSDFID 383