Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., Prophage integrase IntA from Acinetobacter radioresistens SK82

 Score =  184 bits (467), Expect = 4e-51
 Identities = 124/394 (31%), Positives = 199/394 (50%), Gaps = 13/394 (3%)

Query: 8   RQIQTAKPK--DKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMSL 65
           R I++  P    K  RLSDG  L   +R + +  W+F Y RP   K   ++ G YP MSL
Sbjct: 18  RDIKSNNPNGLQKDIRLSDGAGLNLLIRKNGTVMWRFDYTRPVSKKRNTMTVGNYPAMSL 77

Query: 66  AEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKE-GQIKEKTL 124
           A+ARE   + R  LA+G DPQ+ K+  + K   +Q ATFK VAE +K+ +   +   K  
Sbjct: 78  AKAREYRDQFRALLAEGKDPQVEKQGVEEKERLKQQATFKSVAELYKSKQRLAEATVKRN 137

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
           +G + KL    +  +G++P+S +T       +   E++G +E+  R     +++  +AV 
Sbjct: 138 DGIFEKL----YRDVGNMPISDITPRDLAKVIEKDENKGHIESAMRIRSKASQVFRFAVK 193

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKAL-QPHEMHDLIRTVATANIQHV-TRFLIEWQLHT 242
            G+   +    +     + +  H  AL  P +   L+  +     Q V  +  ++     
Sbjct: 194 MGLCERDVAQDLAGTITQREKNHYSALTDPFDFACLLFDIDHYESQLVHVKLALQLAPLV 253

Query: 243 MVRPNEASGARWEEIDMVNKLWII--PKERMKMNREHVVPLTAQTLAILEAIKPISGHRE 300
            VR  E   A+W +I+     W     K   K   +H+VPL+ Q +AIL+     + + +
Sbjct: 254 FVRIGELRNAKWSDINFETATWSYTPSKTSAKTGLDHIVPLSTQAIAILKEALNFTNNSD 313

Query: 301 FIFPSSRNPKVPTDSETANKALGRMGF-KDRTTAHGLRALASTTLNE-QGFEPDVIEAAL 358
           F+FPS  +   P    + N AL RMG+ K+  T HG RA+A T L+E   F  D+IE  L
Sbjct: 314 FVFPSRSDKHRPISDMSINMALRRMGYGKEDMTGHGFRAIARTLLDEVLEFPLDIIEQQL 373

Query: 359 AHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEK 392
           AH  ++   +AYNRT +LD RR +M  WS++ ++
Sbjct: 374 AHQVRDMHGRAYNRTKHLDKRRVMMQRWSDYCDE 407